RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 CXCL9Q07325 125 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 NBR1Q14596 966 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 SAFBQ15424 915 aaKnown RBP eCLIP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 ATL3Q6DD88 541 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 MICU3Q86XE3 530 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 ZNF654Q8IZM8 581 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 STK11IPQ8N1F8 1099 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 ENAHQ8N8S7 591 aaPredicted RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 NSUN7Q8NE18 718 aaKnown RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 NEDD1Q8NHV4 660 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 RNF216Q9NWF9 866 aaPredicted RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 SAP30BPQ9UHR5 308 aaKnown RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 HERC5Q9UII4 1024 aaKnown RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 CFAP45Q9UL16 551 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 BRPF3Q9ULD4 1205 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 NID2Q14112 1375 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 STK36Q9NRP7 1315 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 CYP2D7A0A087X1C5 515 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 SPDYE2BA6NHP3 402 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 H7C1D1 291 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 PRDM1O75626 825 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 BAG4O95429 457 aaKnown RBP9.83□□□□□ -0.84
SF3A1-210ENST00000498259 F13A1P00488 732 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 SPDYE6P0CI01 402 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 IFNAR1P17181 557 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 PLCD1P51178 756 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 SEC23AQ15436 765 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 ARHGAP27Q6ZUM4 889 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 FAM83AQ86UY5 434 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 FAM177A1Q8N128 213 aaPredicted RBP9.83□□□□□ -0.84
SF3A1-210ENST00000498259 NUP133Q8WUM0 1156 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 C8orf76Q96K31 380 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 GMLQ99445 158 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 ZKSCAN3Q9BRR0 538 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 MXD3Q9BW11 206 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 SCAND2PQ9GZW5 306 aaPredicted RBP9.83□□□□□ -0.84
SF3A1-210ENST00000498259 KCNQ5Q9NR82 932 aa9.83□□□□□ -0.84
SF3A1-210ENST00000498259 ORC3Q9UBD5 711 aaPredicted RBP9.83□□□□□ -0.84
SF3A1-210ENST00000498259 COL2A1P02458 1487 aaPredicted RBP9.83□□□□□ -0.84
SF3A1-210ENST00000498259 FZD9O00144 591 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 NFKBIEO00221 500 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 DEXIO95424 95 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 CYP2D6P10635 497 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 TOP1P11387 765 aaKnown RBP9.82□□□□□ -0.84
SF3A1-210ENST00000498259 KRT85P78386 507 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 GNL2Q13823 731 aaKnown RBP9.82□□□□□ -0.84
SF3A1-210ENST00000498259 FAM151AQ8WW52 585 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 DDX11Q96FC9 970 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 RNF26Q9BY78 433 aaPredicted RBP9.82□□□□□ -0.84
SF3A1-210ENST00000498259 FHDC1Q9C0D6 1143 aaPredicted RBP9.82□□□□□ -0.84
SF3A1-210ENST00000498259 CABP5Q9NP86 173 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 INCENPQ9NQS7 918 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 STX8Q9UNK0 236 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 HPS5Q9UPZ3 1129 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 CHD4Q14839 1912 aa9.82□□□□□ -0.84
SF3A1-210ENST00000498259 FMNL1O95466 1100 aaPredicted RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 TTLL1O95922 423 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 MBD3O95983 291 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 RASA1P20936 1047 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 SMARCA1P28370 1054 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 ZNF280AP59817 542 aaPredicted RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 GABPAQ06546 454 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 CERKLQ49MI3 558 aaPredicted RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 FAM47AQ5JRC9 791 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 BRAPQ7Z569 592 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 GPC2Q8N158 579 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 PNMA1Q8ND90 353 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 DYNLL2Q96FJ2 89 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 PRMT6Q96LA8 375 aaPredicted RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 ZNF396Q96N95 335 aaPredicted RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 TDRD3Q9H7E2 651 aaKnown RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 KANSL2Q9H9L4 492 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 NCOA5Q9HCD5 579 aaKnown RBP9.81□□□□□ -0.84
SF3A1-210ENST00000498259 BRMS1Q9HCU9 246 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 MYOZ2Q9NPC6 264 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 SYNPO2Q9UMS6 1093 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 MTMR6Q9Y217 621 aa9.81□□□□□ -0.84
SF3A1-210ENST00000498259 ATRNL1Q5VV63 1379 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 PLIN4Q96Q06 1357 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 JAK2O60674 1132 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 ADD1P35611 737 aaKnown RBP9.8□□□□□ -0.84
SF3A1-210ENST00000498259 TCP10Q12799 353 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 TROAPQ12815 778 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 SPDYE2Q495Y8 402 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 RBM26Q5T8P6 1007 aaKnown RBP9.8□□□□□ -0.84
SF3A1-210ENST00000498259 MCTP1Q6DN14 999 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 TMEM179Q6ZVK1 233 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 FBXO18Q8NFZ0 1043 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 NLGN2Q8NFZ4 835 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 SYAP1Q96A49 352 aaPredicted RBP9.8□□□□□ -0.84
SF3A1-210ENST00000498259 CSRNP1Q96S65 589 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 SLC26A6Q9BXS9 759 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 GINM1Q9NU53 330 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 ZNF70Q9UC06 446 aaPredicted RBP9.8□□□□□ -0.84
SF3A1-210ENST00000498259 LAMB1P07942 1786 aa9.8□□□□□ -0.84
SF3A1-210ENST00000498259 NAV1Q8NEY1 1877 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 GOLGA6L4A6NEF3 574 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 MPHOSPH10O00566 681 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 PRPF3O43395 683 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 TBC1D12O60347 775 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms