RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 DYNLL1P63167 89 aaKnown RBP28.36■■■□□ 2.13
COL27A1-208ENST00000494780 JAG1P78504 1218 aa28.36■■■□□ 2.13
COL27A1-208ENST00000494780 TMED8Q6PL24 325 aaPredicted RBP28.36■■■□□ 2.13
COL27A1-208ENST00000494780 ERC1Q8IUD2 1116 aa28.36■■■□□ 2.13
COL27A1-208ENST00000494780 TAOK2Q9UL54 1235 aa28.36■■■□□ 2.13
COL27A1-208ENST00000494780 FARP2O94887 1054 aaPredicted RBP28.35■■■□□ 2.13
COL27A1-208ENST00000494780 HOXA7P31268 230 aaPredicted RBP28.35■■■□□ 2.13
COL27A1-208ENST00000494780 IRX3P78415 501 aaPredicted RBP28.35■■■□□ 2.13
COL27A1-208ENST00000494780 MORF4L1Q9UBU8 362 aa28.35■■■□□ 2.13
COL27A1-208ENST00000494780 SAP30BPQ9UHR5 308 aaKnown RBP28.35■■■□□ 2.13
COL27A1-208ENST00000494780 FXR1P51114 621 aaKnown RBP eCLIP28.34■■■□□ 2.13
COL27A1-208ENST00000494780 PAK6Q9NQU5 681 aaPredicted RBP28.34■■■□□ 2.13
COL27A1-208ENST00000494780 ZBTB21Q9ULJ3 1066 aa28.34■■■□□ 2.13
COL27A1-208ENST00000494780 DOCK3Q8IZD9 2030 aa28.34■■■□□ 2.13
COL27A1-208ENST00000494780 ZBED9Q6R2W3 1325 aa28.34■■■□□ 2.13
COL27A1-208ENST00000494780 USP17L10C9JJH3 530 aa28.33■■■□□ 2.13
COL27A1-208ENST00000494780 GDF11O95390 407 aa28.33■■■□□ 2.13
COL27A1-208ENST00000494780 MAGEB6Q8N7X4 407 aa28.33■■■□□ 2.13
COL27A1-208ENST00000494780 EXOC6BQ9Y2D4 811 aa28.33■■■□□ 2.13
COL27A1-208ENST00000494780 TFRCP02786 760 aaKnown RBP28.32■■■□□ 2.12
COL27A1-208ENST00000494780 MAP3K12Q12852 859 aa28.32■■■□□ 2.12
COL27A1-208ENST00000494780 AACSQ86V21 672 aa28.32■■■□□ 2.12
COL27A1-208ENST00000494780 MIGA1Q8NAN2 632 aa28.32■■■□□ 2.12
COL27A1-208ENST00000494780 DEFB118Q96PH6 123 aa28.32■■■□□ 2.12
COL27A1-208ENST00000494780 GJD2Q9UKL4 321 aa28.32■■■□□ 2.12
COL27A1-208ENST00000494780 USP5P45974 858 aa28.31■■■□□ 2.12
COL27A1-208ENST00000494780 SHROOM1Q2M3G4 852 aaPredicted RBP28.31■■■□□ 2.12
COL27A1-208ENST00000494780 HSP90AB4PQ58FF6 505 aa28.31■■■□□ 2.12
COL27A1-208ENST00000494780 DIEXFQ68CQ4 756 aaKnown RBP28.31■■■□□ 2.12
COL27A1-208ENST00000494780 PANK1Q8TE04 598 aa28.31■■■□□ 2.12
COL27A1-208ENST00000494780 P2RX7Q99572 595 aaKnown RBP28.31■■■□□ 2.12
COL27A1-208ENST00000494780 HMGCRP04035 888 aa28.3■■■□□ 2.12
COL27A1-208ENST00000494780 CRISPLD2Q9H0B8 497 aa28.3■■■□□ 2.12
COL27A1-208ENST00000494780 ANTXR1Q9H6X2 564 aa28.3■■■□□ 2.12
COL27A1-208ENST00000494780 NR2E3Q9Y5X4 410 aa28.3■■■□□ 2.12
COL27A1-208ENST00000494780 NDUFB9Q9Y6M9 179 aa28.3■■■□□ 2.12
COL27A1-208ENST00000494780 HERVK_113P62684 666 aa28.29■■■□□ 2.12
COL27A1-208ENST00000494780 EHD4Q9H223 541 aa28.29■■■□□ 2.12
COL27A1-208ENST00000494780 MS4A1P11836 297 aa28.28■■■□□ 2.12
COL27A1-208ENST00000494780 TATDN1Q6P1N9 297 aa28.28■■■□□ 2.12
COL27A1-208ENST00000494780 CHRDL2Q6WN34 429 aa28.28■■■□□ 2.12
COL27A1-208ENST00000494780 GPRC5AQ8NFJ5 357 aa28.28■■■□□ 2.12
COL27A1-208ENST00000494780 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.28■■■□□ 2.121e-8■■■■■ 27
COL27A1-208ENST00000494780 MYH1P12882 1939 aa28.28■■■□□ 2.12
COL27A1-208ENST00000494780 GH2P01242 217 aa28.27■■■□□ 2.12
COL27A1-208ENST00000494780 USP17L2Q6R6M4 530 aa28.27■■■□□ 2.12
COL27A1-208ENST00000494780 TTC6Q86TZ1 520 aa28.27■■■□□ 2.12
COL27A1-208ENST00000494780 GTF3C2Q8WUA4 911 aaPredicted RBP28.27■■■□□ 2.12
COL27A1-208ENST00000494780 SERPINB13Q9UIV8 391 aa28.27■■■□□ 2.12
COL27A1-208ENST00000494780 TTF1Q15361 905 aaPredicted RBP28.26■■■□□ 2.11
COL27A1-208ENST00000494780 RHPN1Q8TCX5 695 aa28.26■■■□□ 2.11
COL27A1-208ENST00000494780 TXNRD2Q9NNW7 524 aa28.26■■■□□ 2.11
COL27A1-208ENST00000494780 EMILIN3Q9NT22 766 aa28.26■■■□□ 2.11
COL27A1-208ENST00000494780 IL1RAPL2Q9NP60 686 aa28.25■■■□□ 2.11
COL27A1-208ENST00000494780 RBPJLQ9UBG7 517 aa28.25■■■□□ 2.11
COL27A1-208ENST00000494780 RPTORQ8N122 1335 aa28.24■■■□□ 2.11
COL27A1-208ENST00000494780 C12orf42Q96LP6 360 aa28.24■■■□□ 2.11
COL27A1-208ENST00000494780 RIOK1Q9BRS2 568 aaKnown RBP28.24■■■□□ 2.11
COL27A1-208ENST00000494780 HMX1Q9NP08 348 aaPredicted RBP28.24■■■□□ 2.11
COL27A1-208ENST00000494780 TRIOBPQ9H2D6 2365 aa28.24■■■□□ 2.11
COL27A1-208ENST00000494780 PLXNB2O15031 1838 aa28.23■■■□□ 2.11
COL27A1-208ENST00000494780 MAPK4P31152 587 aa28.23■■■□□ 2.11
COL27A1-208ENST00000494780 RPAP2Q8IXW5 612 aaPredicted RBP28.23■■■□□ 2.11
COL27A1-208ENST00000494780 CLASRPQ8N2M8 674 aaKnown RBP28.23■■■□□ 2.11
COL27A1-208ENST00000494780 ANKLE1Q8NAG6 615 aa28.23■■■□□ 2.11
COL27A1-208ENST00000494780 SOCS4Q8WXH5 440 aa28.23■■■□□ 2.11
COL27A1-208ENST00000494780 NUDT12Q9BQG2 462 aa28.23■■■□□ 2.11
COL27A1-208ENST00000494780 PEX10O60683 326 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 XRCC5P13010 732 aaKnown RBP28.22■■■□□ 2.11
COL27A1-208ENST00000494780 ERVK-9P63128 1117 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 ERVK-24P63145 666 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 CERKLQ49MI3 558 aaPredicted RBP28.22■■■□□ 2.11
COL27A1-208ENST00000494780 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.22■■■□□ 2.11
COL27A1-208ENST00000494780 TRIB2Q92519 343 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 KIF1BPQ96EK5 621 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 PAWRQ96IZ0 340 aaKnown RBP28.22■■■□□ 2.11
COL27A1-208ENST00000494780 FEZ1Q99689 392 aa28.22■■■□□ 2.11
COL27A1-208ENST00000494780 RBM27Q9P2N5 1060 aaKnown RBP28.22■■■□□ 2.11
COL27A1-208ENST00000494780 MAGEB6P1A0A0J9YX57 407 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 EVI5O60447 810 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 HMMRO75330 724 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 CYP2B6P20813 491 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 USP14P54578 494 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 TRIM32Q13049 653 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 PDE3AQ14432 1141 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 ABCB5Q2M3G0 1257 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 Q3C1V9 767 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 NECAB2Q7Z6G3 386 aa28.21■■■□□ 2.11
COL27A1-208ENST00000494780 RAB3GAP1Q15042 981 aa28.2■■■□□ 2.1
COL27A1-208ENST00000494780 CCAR1Q8IX12 1150 aaKnown RBP28.2■■■□□ 2.1
COL27A1-208ENST00000494780 TRMT44Q8IYL2 757 aaKnown RBP28.2■■■□□ 2.1
COL27A1-208ENST00000494780 PAGR1Q9BTK6 254 aa28.2■■■□□ 2.1
COL27A1-208ENST00000494780 KIAA1683Q9H0B3 1180 aa28.2■■■□□ 2.1
COL27A1-208ENST00000494780 CABP5Q9NP86 173 aa28.2■■■□□ 2.1
COL27A1-208ENST00000494780 DDX19BQ9UMR2 479 aa28.2■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L15C9J2P7 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L13C9JLJ4 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L11C9JVI0 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L18D6R9N7 530 aa28.19■■■□□ 2.1
COL27A1-208ENST00000494780 USP17L22D6RA61 530 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms