RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PLCG1P19174 1290 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 CYP7A1P22680 504 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 EIF4A3P38919 411 aaKnown RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 YARSP54577 528 aaKnown RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 RING1Q06587 406 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 MPP2Q14168 576 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 BNC2Q6ZN30 1099 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 XAGE3Q8WTP9 111 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 GATA6Q92908 595 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 RNF34Q969K3 372 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 MRRFQ96E11 262 aaKnown RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 MIPEPQ99797 713 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 DUSP23Q9BVJ7 150 aa3.6□□□□□ -1.83
HMGB1-208ENST00000490788 METTL5Q9NRN9 209 aaKnown RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 BSDC1Q9NW68 430 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-208ENST00000490788 KRTAP9-7A8MTY7 169 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 FAM155AB1AL88 458 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 GFRA2O00451 464 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 SCAMP3O14828 347 aaKnown RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 TLR3O15455 904 aaKnown RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 CILPO75339 1184 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 LEFTY1O75610 366 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 F13A1P00488 732 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 ITIH2P19823 946 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 HOXA10P31260 410 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 MCM4P33991 863 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 TNNI2P48788 182 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 CDK8P49336 464 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 PRAMEF13Q5VWM6 474 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 SLC6A19Q695T7 634 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 ERMP1Q7Z2K6 904 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 USP48Q86UV5 1035 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 VSIG10LQ86VR7 867 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 TP53INP2Q8IXH6 220 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 SHISA5Q8N114 240 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 STK11IPQ8N1F8 1099 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 FAM13CQ8NE31 585 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 ZNF296Q8WUU4 475 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 TMEM87BQ96K49 555 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 RHOVQ96L33 236 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 COPRSQ9NQ92 184 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 PRDM5Q9NQX1 630 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-208ENST00000490788 PODXL2Q9NZ53 605 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 ADAM30Q9UKF2 790 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 ROBO2Q9HCK4 1378 aa3.59□□□□□ -1.83
HMGB1-208ENST00000490788 CCDC180Q9P1Z9 1646 aa3.59□□□□□ -1.84
HMGB1-208ENST00000490788 GRIN3BO60391 1043 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 ADAMTS4O75173 837 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 CST3P01034 146 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-208ENST00000490788 CEACAM5P06731 702 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 VAMP1P23763 118 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 NTF4P34130 210 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 APOBRQ0VD83 1088 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 IFI16Q16666 785 aaKnown RBP3.58□□□□□ -1.84
HMGB1-208ENST00000490788 CYB5RLQ6IPT4 315 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 LETMD1Q6P1Q0 360 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 FAM196AQ6ZSG2 479 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 REC114Q7Z4M0 266 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 KIAA0825Q8IV33 1275 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 PHACTR4Q8IZ21 702 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 FAM181AQ8N9Y4 354 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 RGS22Q8NE09 1264 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 FLCNQ8NFG4 579 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 NETO1Q8TDF5 533 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 MISP3Q96FF7 219 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 FBXL18Q96ME1 805 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 SPON2Q9BUD6 331 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 FBRSQ9HAH7 460 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 MKNK2Q9HBH9 465 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 ZC3H7BQ9UGR2 993 aaKnown RBP3.58□□□□□ -1.84
HMGB1-208ENST00000490788 KLHL3Q9UH77 587 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 ADGRE2Q9UHX3 823 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 MAPK8IP1Q9UQF2 711 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 SLC5A6Q9Y289 635 aa3.58□□□□□ -1.84
HMGB1-208ENST00000490788 EIF4G1Q04637 1599 aaKnown RBP3.58□□□□□ -1.84
HMGB1-208ENST00000490788 TMEM265A0A087WTH1 108 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 FAM221AA4D161 298 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 CBX7O95931 251 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 CAP2P40123 477 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 ETV3P41162 512 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 ZNF165P49910 485 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 FANCCQ00597 558 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 SLBPQ14493 270 aaKnown RBP eCLIP3.57□□□□□ -1.84
HMGB1-208ENST00000490788 NKG7Q16617 165 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 SFRP5Q5T4F7 317 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 FBXL19Q6PCT2 694 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 UBE3DQ7Z6J8 389 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 MCATQ8IVS2 390 aaKnown RBP3.57□□□□□ -1.84
HMGB1-208ENST00000490788 MRPL41Q8IXM3 137 aaKnown RBP3.57□□□□□ -1.84
HMGB1-208ENST00000490788 AGBL5Q8NDL9 886 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 NKD1Q969G9 470 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 COX4I2Q96KJ9 171 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 HRASLS5Q96KN8 279 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 DPH2Q9BQC3 489 aaPredicted RBP3.57□□□□□ -1.84
HMGB1-208ENST00000490788 KRTAP9-3Q9BYQ3 159 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 BICRAQ9NZM4 1560 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 REV1Q9UBZ9 1251 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 TJP2Q9UDY2 1190 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 CCDC39Q9UFE4 941 aa3.57□□□□□ -1.84
HMGB1-208ENST00000490788 CORINQ9Y5Q5 1042 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms