RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 SRGAP2O75044 1071 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 YEATS4O95619 227 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 SLC39A14Q15043 492 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 PDIA6Q15084 440 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 SHC4Q6S5L8 630 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 KSR1Q8IVT5 923 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 PARD6BQ9BYG5 372 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 ANKIB1Q9P2G1 1089 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 SMIM22K7EJ46 135 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 RBL2Q08999 1139 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 NCAPH2Q6IBW4 605 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 NOSTRINQ8IVI9 506 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 IFNL3Q8IZI9 196 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 TBC1D7Q9P0N9 293 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 ARHGAP6O43182 974 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 AKR1B10O60218 316 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 CXCR5P32302 372 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 DYNLL1P63167 89 aaKnown RBP12.11□□□□□ -0.47
CHD3-208ENST00000470531 ODF2Q5BJF6 829 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 CACNA2D4Q7Z3S7 1137 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 DZIP1Q86YF9 867 aaKnown RBP12.11□□□□□ -0.47
CHD3-208ENST00000470531 IFT81Q8WYA0 676 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 MCM9Q9NXL9 1143 aa12.11□□□□□ -0.47
CHD3-208ENST00000470531 CDC25BP30305 580 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 SLC35F6Q8N357 371 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 CCDC148Q8NFR7 591 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 GNL3LQ9NVN8 582 aaKnown RBP12.1□□□□□ -0.47
CHD3-208ENST00000470531 BABAM1Q9NWV8 329 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 MROH7-TTC4A0A0A0MT08 1334 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 NMT2O60551 498 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 STIM1Q13586 685 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ZSCAN26Q16670 478 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 DYMQ7RTS9 669 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 AMOTL1Q8IY63 956 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ESR2Q92731 530 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ACBD3Q9H3P7 528 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.1□□□□□ -0.47
CHD3-208ENST00000470531 SYNRGQ9UMZ2 1314 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 A0A0U1RQJ8 604 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 TRIM66O15016 1216 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ATP6V1AP38606 617 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ASIC1P78348 528 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 PIP4K2BP78356 416 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 CYP27A1Q02318 531 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 HLTFQ14527 1009 aaKnown RBP eCLIP12.1□□□□□ -0.47
CHD3-208ENST00000470531 LETM2Q2VYF4 491 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 CAVIN4Q5BKX8 364 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 FAM182BQ5T319 152 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ATG9AQ7Z3C6 839 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 SPATA5Q8NB90 893 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ATRIPQ8WXE1 791 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 ZBTB1Q9Y2K1 713 aa12.1□□□□□ -0.47
CHD3-208ENST00000470531 NEDD4P46934 1319 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 USP17L12C9JPN9 530 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 USP17L21D6R901 530 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 MPHOSPH10O00566 681 aaKnown RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 FMR1Q06787 632 aaKnown RBP eCLIP12.09□□□□□ -0.477e-9■■■□□ 17.5
CHD3-208ENST00000470531 TTF1Q15361 905 aaPredicted RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 SARM1Q6SZW1 724 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 LCORLQ8N3X6 602 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 SYMPKQ92797 1274 aaKnown RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 MAN1B1Q9UKM7 699 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 IL2RBP14784 551 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 SPA17Q15506 151 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 RNF187Q5TA31 235 aaPredicted RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 ZNF654Q8IZM8 581 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 FAM207AQ9NSI2 230 aaPredicted RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 BTG4Q9NY30 223 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 MAGEB6P1A0A0J9YX57 407 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 HGSO14964 777 aaPredicted RBP12.09□□□□□ -0.47
CHD3-208ENST00000470531 CYP2C19P33261 490 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 TCIRG1Q13488 830 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.09□□□□□ -0.47
CHD3-208ENST00000470531 DLC1Q96QB1 1528 aa12.09□□□□□ -0.47
CHD3-208ENST00000470531 PTGDRQ13258 359 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 TCERG1LQ5VWI1 586 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 CNKSR2Q8WXI2 1034 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 HDAC6Q9UBN7 1215 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 CUTAO60888 179 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 H2AFXP16104 143 aaPredicted RBP12.08□□□□□ -0.48
CHD3-208ENST00000470531 SOGA3Q5TF21 947 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 TAX1BP1Q86VP1 789 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 IMPACTQ9P2X3 320 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 TRIM10Q9UDY6 481 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 PREX1Q8TCU6 1659 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 NPHP4O75161 1426 aaPredicted RBP12.08□□□□□ -0.48
CHD3-208ENST00000470531 TNKSO95271 1327 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 COL15A1P39059 1388 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 KRT2P35908 639 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 PRPF4BQ13523 1007 aaKnown RBP12.08□□□□□ -0.48
CHD3-208ENST00000470531 AKNAD1Q5T1N1 836 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 MICALL1Q8N3F8 863 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 FAN1Q9Y2M0 1017 aa12.08□□□□□ -0.48
CHD3-208ENST00000470531 TUBGCP6Q96RT7 1819 aa12.07□□□□□ -0.48
CHD3-208ENST00000470531 PEAK1Q9H792 1746 aa12.07□□□□□ -0.48
CHD3-208ENST00000470531 SASH3O75995 380 aa12.07□□□□□ -0.48
CHD3-208ENST00000470531 NOP2P46087 812 aaKnown RBP12.07□□□□□ -0.48
CHD3-208ENST00000470531 ANTXR2P58335 489 aa12.07□□□□□ -0.48
CHD3-208ENST00000470531 PICALMQ13492 652 aa12.07□□□□□ -0.48
CHD3-208ENST00000470531 LONRF2Q1L5Z9 754 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms