RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 USP17L10C9JJH3 530 aa16.17■□□□□ 0.18
CPSF4-210ENST00000469897 TFRCP02786 760 aaKnown RBP16.17■□□□□ 0.18
CPSF4-210ENST00000469897 RPAP2Q8IXW5 612 aaPredicted RBP16.17■□□□□ 0.18
CPSF4-210ENST00000469897 EMILIN3Q9NT22 766 aa16.17■□□□□ 0.18
CPSF4-210ENST00000469897 GJD2Q9UKL4 321 aa16.17■□□□□ 0.18
CPSF4-210ENST00000469897 ZBTB21Q9ULJ3 1066 aa16.17■□□□□ 0.18
CPSF4-210ENST00000469897 COLQQ9Y215 455 aaPredicted RBP16.17■□□□□ 0.18
CPSF4-210ENST00000469897 CENPFP49454 3210 aa16.17■□□□□ 0.18
CPSF4-210ENST00000469897 AK9Q5TCS8 1911 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 GH2P01242 217 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 HOXA7P31268 230 aaPredicted RBP16.16■□□□□ 0.18
CPSF4-210ENST00000469897 IRX3P78415 501 aaPredicted RBP16.16■□□□□ 0.18
CPSF4-210ENST00000469897 TATDN1Q6P1N9 297 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 SIRT2Q8IXJ6 389 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 CLASRPQ8N2M8 674 aaKnown RBP16.16■□□□□ 0.18
CPSF4-210ENST00000469897 DEFB118Q96PH6 123 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 GINM1Q9NU53 330 aa16.16■□□□□ 0.18
CPSF4-210ENST00000469897 Q3C1V9 767 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 SLC9C2Q5TAH2 1124 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 UBE2Q1Q7Z7E8 422 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 TTC6Q86TZ1 520 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 CERS3Q8IU89 383 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 ZBTB40Q9NUA8 1239 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 PCDH10Q9P2E7 1040 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 RBPJLQ9UBG7 517 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 MORF4L1Q9UBU8 362 aa16.15■□□□□ 0.18
CPSF4-210ENST00000469897 PDE4DIPQ5VU43 2346 aa16.14■□□□□ 0.18
CPSF4-210ENST00000469897 MAGEB6P1A0A0J9YX57 407 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 IFIT2P09913 472 aaKnown RBP16.14■□□□□ 0.17
CPSF4-210ENST00000469897 PLCD1P51178 756 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 ZYXQ15942 572 aaKnown RBP16.14■□□□□ 0.17
CPSF4-210ENST00000469897 GPRC5AQ8NFJ5 357 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 KIF1BPQ96EK5 621 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 RIOK1Q9BRS2 568 aaKnown RBP16.14■□□□□ 0.17
CPSF4-210ENST00000469897 TXNRD2Q9NNW7 524 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 SERPINB13Q9UIV8 391 aa16.14■□□□□ 0.17
CPSF4-210ENST00000469897 GOLIM4O00461 696 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 POLR3DP05423 398 aaPredicted RBP16.13■□□□□ 0.17
CPSF4-210ENST00000469897 HERVK_113P62684 666 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 TRIM32Q13049 653 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 RAB3GAP1Q15042 981 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 TTF1Q15361 905 aaPredicted RBP16.13■□□□□ 0.17
CPSF4-210ENST00000469897 CERKLQ49MI3 558 aaPredicted RBP16.13■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L2Q6R6M4 530 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 DNAJC2Q99543 621 aaKnown RBP16.13■□□□□ 0.17
CPSF4-210ENST00000469897 HTATIP2Q9BUP3 242 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 DDX19BQ9UMR2 479 aa16.13■□□□□ 0.17
CPSF4-210ENST00000469897 HMMRO75330 724 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 FARP2O94887 1054 aaPredicted RBP16.12■□□□□ 0.17
CPSF4-210ENST00000469897 PDE6AP16499 860 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 CYP2B6P20813 491 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 ABCB5Q2M3G0 1257 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 TMED8Q6PL24 325 aaPredicted RBP16.12■□□□□ 0.17
CPSF4-210ENST00000469897 POTEEQ6S8J3 1075 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 EDC3Q96F86 508 aaKnown RBP16.12■□□□□ 0.17
CPSF4-210ENST00000469897 EHD4Q9H223 541 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 PAK6Q9NQU5 681 aaPredicted RBP16.12■□□□□ 0.17
CPSF4-210ENST00000469897 RCAN3Q9UKA8 241 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 BRCA2P51587 3418 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 MKI67P46013 3256 aaKnown RBP16.12■□□□□ 0.17
CPSF4-210ENST00000469897 DOCK2Q92608 1830 aa16.12■□□□□ 0.17
CPSF4-210ENST00000469897 RAB11FIP3O75154 756 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 EVX2Q03828 476 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 ACER1Q8TDN7 264 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.11■□□□□ 0.17
CPSF4-210ENST00000469897 PAGR1Q9BTK6 254 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 BOLA2Q9H3K6 86 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 CABP5Q9NP86 173 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 MCM9Q9NXL9 1143 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 ZNF532Q9HCE3 1301 aa16.11■□□□□ 0.17
CPSF4-210ENST00000469897 HMGCRP04035 888 aa16.1■□□□□ 0.17
CPSF4-210ENST00000469897 SHMT1P34896 483 aa16.1■□□□□ 0.17
CPSF4-210ENST00000469897 SLFNL1Q499Z3 407 aa16.1■□□□□ 0.17
CPSF4-210ENST00000469897 CHRDL2Q6WN34 429 aa16.1■□□□□ 0.17
CPSF4-210ENST00000469897 CCAR1Q8IX12 1150 aaKnown RBP16.1■□□□□ 0.17
CPSF4-210ENST00000469897 PAWRQ96IZ0 340 aaKnown RBP16.1■□□□□ 0.17
CPSF4-210ENST00000469897 FEZ1Q99689 392 aa16.1■□□□□ 0.17
CPSF4-210ENST00000469897 CRNKL1Q9BZJ0 848 aaKnown RBP16.1■□□□□ 0.17
CPSF4-210ENST00000469897 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.1■□□□□ 0.179e-6■■□□□ 13.2
CPSF4-210ENST00000469897 HMX1Q9NP08 348 aaPredicted RBP16.1■□□□□ 0.17
CPSF4-210ENST00000469897 TCRBV5S4A2TA0A5A2 114 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L15C9J2P7 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L13C9JLJ4 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L11C9JVI0 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L18D6R9N7 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L22D6RA61 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L17D6RBQ6 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L19D6RCP7 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L20D6RJB6 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 FXR1P51114 621 aaKnown RBP eCLIP16.09■□□□□ 0.17
CPSF4-210ENST00000469897 ERVK-9P63128 1117 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 ERVK-24P63145 666 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 USP17L24Q0WX57 530 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 C20orf194Q5TEA3 1177 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 CATSPERGQ6ZRH7 1159 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 LCORLQ8N3X6 602 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 SDR42E1Q8WUS8 393 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 NUDT12Q9BQG2 462 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 CRISPLD2Q9H0B8 497 aa16.09■□□□□ 0.17
CPSF4-210ENST00000469897 PORCNQ9H237 461 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms