RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 FAM84BQ96KN1 310 aaPredicted RBP11.96□□□□□ -0.5
CD44-210ENST00000434472 CRNKL1Q9BZJ0 848 aaKnown RBP11.96□□□□□ -0.5
CD44-210ENST00000434472 BCL11BQ9C0K0 894 aaPredicted RBP11.96□□□□□ -0.5
CD44-210ENST00000434472 TRIM75PA6NK02 468 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 KRT2P35908 639 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 MDM2Q00987 491 aaPredicted RBP11.95□□□□□ -0.5
CD44-210ENST00000434472 POSTNQ15063 836 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 ADGRA1Q86SQ6 560 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 ZNF710Q8N1W2 664 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 LINC00116Q8NCU8 138 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 ANKRD7Q92527 254 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 SMARCE1Q969G3 411 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 NLRP3Q96P20 1036 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 CCDC94Q9BW85 323 aaPredicted RBP11.95□□□□□ -0.5
CD44-210ENST00000434472 IQSEC3Q9UPP2 1182 aaPredicted RBP11.95□□□□□ -0.5
CD44-210ENST00000434472 PCDHA5Q9Y5H7 936 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 A0A1B0GUL6 1792 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 DUOX1Q9NRD9 1551 aa11.95□□□□□ -0.5
CD44-210ENST00000434472 SERPINC1P01008 464 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 LMOD1P29536 600 aaPredicted RBP11.94□□□□□ -0.5
CD44-210ENST00000434472 UBASH3AP57075 661 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 RPS8P62241 208 aaKnown RBP11.94□□□□□ -0.5
CD44-210ENST00000434472 NT5DC1Q5TFE4 455 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 SPTY2D1Q68D10 685 aaPredicted RBP11.94□□□□□ -0.5
CD44-210ENST00000434472 ENAHQ8N8S7 591 aaPredicted RBP11.94□□□□□ -0.5
CD44-210ENST00000434472 PHF20Q9BVI0 1012 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 ATP8A2Q9NTI2 1148 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 AATFQ9NY61 560 aaKnown RBP eCLIP11.94□□□□□ -0.5
CD44-210ENST00000434472 NARFQ9UHQ1 456 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 TAOK2Q9UL54 1235 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 SCN7AQ01118 1682 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 COL1A1P02452 1464 aaPredicted RBP11.94□□□□□ -0.5
CD44-210ENST00000434472 CACNA1SQ13698 1873 aa11.94□□□□□ -0.5
CD44-210ENST00000434472 RPS6KA4O75676 772 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 HIBADHP31937 336 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 DYNLL1P63167 89 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 SBK1Q52WX2 424 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 CTR9Q6PD62 1173 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 PDCL2Q8N4E4 241 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 KIF18AQ8NI77 898 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 FERMT2Q96AC1 680 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 NSUN4Q96CB9 384 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 ARPP21Q9UBL0 812 aaPredicted RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.93□□□□□ -0.5
CD44-210ENST00000434472 PCDHB6Q9Y5E3 794 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 NUTM2BA6NNL0 878 aaPredicted RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 NUTM2EB1AL46 878 aaPredicted RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 UBE2Q2LH0YL09 131 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 KCNQ2O43526 872 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 SARSP49591 514 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 FUT2Q10981 343 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 MORC3Q14149 939 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 CCDC178Q5BJE1 867 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 ISM2Q6H9L7 571 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 ARMCX5Q6P1M9 558 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 C3orf67Q6ZVT6 689 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 TMTC3Q6ZXV5 915 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 FCHSD1Q86WN1 690 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 NUTM2AQ8IVF1 878 aaPredicted RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 VSTM4Q8IW00 320 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 CCDC82Q8N4S0 544 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 CTCFLQ8NI51 663 aaPredicted RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 ENOX1Q8TC92 643 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 SETDB2Q96T68 719 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 PYM1Q9BRP8 204 aaKnown RBP11.93□□□□□ -0.5
CD44-210ENST00000434472 CABP5Q9NP86 173 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 SERTAD1Q9UHV2 236 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 MAN1B1Q9UKM7 699 aa11.93□□□□□ -0.5
CD44-210ENST00000434472 DLEC1Q9Y238 1755 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 POLR2DO15514 142 aaKnown RBP11.92□□□□□ -0.5
CD44-210ENST00000434472 ERCC5P28715 1186 aaPredicted RBP11.92□□□□□ -0.5
CD44-210ENST00000434472 PDE4BQ07343 736 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 NR5A1Q13285 461 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 PKN1Q16512 942 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 CFAP100Q494V2 611 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 TBC1D9BQ66K14 1250 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 TPTE2Q6XPS3 522 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 TSC1Q92574 1164 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 ZNF592Q92610 1267 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 CELF1Q92879 486 aaKnown RBP11.92□□□□□ -0.5
CD44-210ENST00000434472 HSD3B7Q9H2F3 369 aa11.92□□□□□ -0.5
CD44-210ENST00000434472 USP27XA6NNY8 438 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 USP17L12C9JPN9 530 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 USP17L21D6R901 530 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 ZPR1O75312 459 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 TOP1P11387 765 aaKnown RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 TRAPPC10P48553 1259 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 MECOMQ03112 1051 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 TROAPQ12815 778 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 BICDL1Q6ZP65 573 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 NBPF5PQ86XG9 351 aaPredicted RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 FOXP4Q8IVH2 680 aaPredicted RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 CMTR1Q8N1G2 835 aaKnown RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 OXER1Q8TDS5 423 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 CSRNP2Q9H175 543 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 FANCLQ9NW38 375 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 CGNQ9P2M7 1197 aaKnown RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 V9GY48 417 aaPredicted RBP11.91□□□□□ -0.5
CD44-210ENST00000434472 MAST2Q6P0Q8 1798 aa11.91□□□□□ -0.5
CD44-210ENST00000434472 COL4A1P02462 1669 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms