RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PNMA8AQ86V59 439 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-204ENST00000427724 SYCP3Q8IZU3 236 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-204ENST00000427724 ANO10Q9NW15 660 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 MYO3BQ8WXR4 1341 aa12.1□□□□□ -0.47
TCOF1-204ENST00000427724 TMEM232C9JQI7 657 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 RIOK3O14730 519 aaKnown RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 GNA11P29992 359 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 DMTNQ08495 405 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 ANGEL2Q5VTE6 544 aaKnown RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 CRAMP1Q96RY5 1269 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 ATP6V0A2Q9Y487 856 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 IBTKQ9P2D0 1353 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 CHMP2AO43633 222 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 PRDX5P30044 214 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 APOBRQ0VD83 1088 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 KRT222Q8N1A0 295 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 BCL2L12Q9HB09 334 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 NEXMIFQ5QGS0 1516 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 DDX39AO00148 427 aaKnown RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 PTH1RQ03431 593 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 MAP1SQ66K74 1059 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 ARPP21Q9UBL0 812 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-204ENST00000427724 CD163L1Q9NR16 1453 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 CNTNAP4Q9C0A0 1308 aa12.09□□□□□ -0.47
TCOF1-204ENST00000427724 SLFN13Q68D06 897 aa12.08□□□□□ -0.47
TCOF1-204ENST00000427724 GLG1Q92896 1179 aa12.08□□□□□ -0.47
TCOF1-204ENST00000427724 PI4KBQ9UBF8 816 aa12.08□□□□□ -0.47
TCOF1-204ENST00000427724 ATP5JP18859 108 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
TCOF1-204ENST00000427724 TBC1D16Q8TBP0 767 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 MYL10Q9BUA6 226 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 hCG_1642624A0A1W2PR95 340 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 SPOUT1Q5T280 376 aaKnown RBP12.08□□□□□ -0.48
TCOF1-204ENST00000427724 UPF1Q92900 1129 aaKnown RBP eCLIP12.08□□□□□ -0.48
TCOF1-204ENST00000427724 ADCY9O60503 1353 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 EPHA10Q5JZY3 1008 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 KLHL10Q6JEL2 608 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 SEC62Q99442 399 aaKnown RBP12.08□□□□□ -0.48
TCOF1-204ENST00000427724 SEPT11Q9NVA2 429 aaKnown RBP12.08□□□□□ -0.48
TCOF1-204ENST00000427724 NRXN1Q9ULB1 1477 aa12.08□□□□□ -0.48
TCOF1-204ENST00000427724 RTL9Q8NET4 1388 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 AOX1Q06278 1338 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 TESPA1A2RU30 521 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 SPP2Q13103 211 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 JAKMIP3Q5VZ66 844 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 EEPD1Q7L9B9 569 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 UBXN4Q92575 508 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 V9GY48 417 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 RFX1P22670 979 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 SFPQP23246 707 aaKnown RBP eCLIP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 PPARAQ07869 468 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 TAF1CQ15572 869 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 FAM212AQ96EL1 285 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 AZI2Q9H6S1 392 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 MLXIPQ9HAP2 919 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 DBNLQ9UJU6 430 aaKnown RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 FRMPD2Q68DX3 1309 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 PATL2C9JE40 543 aaKnown RBP12.07□□□□□ -0.48
TCOF1-204ENST00000427724 SLC27A2O14975 620 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 ME3Q16798 604 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 HSP90B2PQ58FF3 399 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 LEKR1Q6ZMV7 388 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 CDC37L1Q7L3B6 337 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 SETBP1Q9Y6X0 1596 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 PREX1Q8TCU6 1659 aa12.07□□□□□ -0.48
TCOF1-204ENST00000427724 TBCAO75347 108 aaKnown RBP12.06□□□□□ -0.48
TCOF1-204ENST00000427724 PTPN12Q05209 780 aaKnown RBP12.06□□□□□ -0.48
TCOF1-204ENST00000427724 RASA3Q14644 834 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 STX1AQ16623 288 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 DHX32Q7L7V1 743 aaKnown RBP12.06□□□□□ -0.48
TCOF1-204ENST00000427724 KIF18AQ8NI77 898 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ISCA1Q9BUE6 129 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 TMEM106CQ9BVX2 250 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 PNMA3Q9UL41 463 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ZDHHC9Q9Y397 364 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 CSPG5O95196 566 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 GOLGA8HP0CJ92 632 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 CUL4AQ13619 759 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 RASGRF1Q13972 1273 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 IFNL3Q8IZI9 196 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 CCDC17Q96LX7 622 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ZNF341Q9BYN7 854 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ELP3Q9H9T3 547 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 NCAPD2Q15021 1401 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 CTAGE5O15320 804 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 LETM2Q2VYF4 491 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ADCK5Q3MIX3 580 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 TMCO3Q6UWJ1 677 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 RNF169Q8NCN4 708 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 SYT17Q9BSW7 474 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 STAP2Q9UGK3 403 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 MKRN1Q9UHC7 482 aaKnown RBP12.06□□□□□ -0.48
TCOF1-204ENST00000427724 CD2APQ9Y5K6 639 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 PSMD14O00487 310 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ASNSP08243 561 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 TCERG1LQ5VWI1 586 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 STYK1Q6J9G0 422 aa12.06□□□□□ -0.48
TCOF1-204ENST00000427724 DHX36Q9H2U1 1008 aaKnown RBP12.06□□□□□ -0.48
TCOF1-204ENST00000427724 ZSCAN16Q9H4T2 348 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms