RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 SMCR8Q8TEV9 937 aaPredicted RBP23.71■■□□□ 1.39
TSPAN4-209ENST00000409543 FMNL1O95466 1100 aaPredicted RBP23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 POLR3DP05423 398 aaPredicted RBP23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 PLCD1P51178 756 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 BACE1P56817 501 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 PABPC4Q13310 644 aaKnown RBP eCLIP23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 UBE3CQ15386 1083 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 SHROOM1Q2M3G4 852 aaPredicted RBP23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 SLC9C1Q4G0N8 1177 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 NBPF11Q86T75 865 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 GPATCH3Q96I76 525 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 SRRDQ9UH36 339 aa23.7■■□□□ 1.38
TSPAN4-209ENST00000409543 C19orf81C9J6K1 198 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 ECM2O94769 699 aaPredicted RBP23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 MTMR2Q13614 643 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 ZSCAN25Q6NSZ9 544 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 ZNF333Q96JL9 665 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 ARMT1Q9H993 441 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 DCP1AQ9NPI6 582 aaPredicted RBP23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 MCM9Q9NXL9 1143 aa23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 DDX60LQ5H9U9 1706 aaKnown RBP23.69■■□□□ 1.38
TSPAN4-209ENST00000409543 USP17L10C9JJH3 530 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 GH2P01242 217 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 OSBPP22059 807 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 FCGRTP55899 365 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 SLFNL1Q499Z3 407 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 SDR42E1Q8WUS8 393 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 CRBNQ96SW2 442 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 TMOD4Q9NZQ9 345 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 NAV1Q8NEY1 1877 aa23.68■■□□□ 1.38
TSPAN4-209ENST00000409543 MBD4O95243 580 aa23.67■■□□□ 1.38
TSPAN4-209ENST00000409543 GABPAQ06546 454 aa23.67■■□□□ 1.38
TSPAN4-209ENST00000409543 CERKLQ49MI3 558 aaPredicted RBP23.67■■□□□ 1.38
TSPAN4-209ENST00000409543 MYH7P12883 1935 aa23.67■■□□□ 1.38
TSPAN4-209ENST00000409543 SHMT1P34896 483 aa23.66■■□□□ 1.38
TSPAN4-209ENST00000409543 GCLCP48506 637 aaPredicted RBP23.66■■□□□ 1.38
TSPAN4-209ENST00000409543 ASCC2Q9H1I8 757 aaPredicted RBP23.66■■□□□ 1.38
TSPAN4-209ENST00000409543 ATP8A2Q9NTI2 1148 aa23.66■■□□□ 1.38
TSPAN4-209ENST00000409543 TNRC18O15417 2968 aaPredicted RBP23.66■■□□□ 1.38
TSPAN4-209ENST00000409543 MGAMO43451 1857 aa23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 CHGBP05060 677 aa23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 HOXA7P31268 230 aaPredicted RBP23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 ABCB5Q2M3G0 1257 aa23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 ANKRD13CQ8N6S4 541 aa23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 TAOK2Q9UL54 1235 aa23.65■■□□□ 1.38
TSPAN4-209ENST00000409543 MYPNQ86TC9 1320 aa23.64■■□□□ 1.38
TSPAN4-209ENST00000409543 CENPFP49454 3210 aa23.64■■□□□ 1.38
TSPAN4-209ENST00000409543 POTEFA5A3E0 1075 aa23.64■■□□□ 1.37
TSPAN4-209ENST00000409543 PRKAB2O43741 272 aa23.64■■□□□ 1.37
TSPAN4-209ENST00000409543 FAM110CQ1W6H9 321 aa23.64■■□□□ 1.37
TSPAN4-209ENST00000409543 KBTBD3Q8NAB2 608 aa23.64■■□□□ 1.37
TSPAN4-209ENST00000409543 CABP5Q9NP86 173 aa23.64■■□□□ 1.37
TSPAN4-209ENST00000409543 TTC41PQ6P2S7 1318 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 RBBP6Q7Z6E9 1792 aaKnown RBP23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 TSHZ3Q63HK5 1081 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 USP17L2Q6R6M4 530 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 RAET1EQ8TD07 263 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 SH3TC2Q8TF17 1288 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 TMEM106CQ9BVX2 250 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 EMILIN3Q9NT22 766 aa23.63■■□□□ 1.37
TSPAN4-209ENST00000409543 KIAA0100Q14667 2235 aaKnown RBP23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 CYP2D6P10635 497 aa23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 IRX3P78415 501 aaPredicted RBP23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 EVX2Q03828 476 aa23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 PRKCZQ05513 592 aa23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 RAB3GAP1Q15042 981 aa23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 PUS7LQ9H0K6 701 aaKnown RBP23.62■■□□□ 1.37
TSPAN4-209ENST00000409543 TNPO2O14787 897 aaKnown RBP23.61■■□□□ 1.37
TSPAN4-209ENST00000409543 DDRGK1Q96HY6 314 aa23.61■■□□□ 1.37
TSPAN4-209ENST00000409543 SWAP70Q9UH65 585 aa23.61■■□□□ 1.37
TSPAN4-209ENST00000409543 SLC4A4Q9Y6R1 1079 aa23.61■■□□□ 1.37
TSPAN4-209ENST00000409543 ERC2O15083 957 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 GRK4P32298 578 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 HDAC1Q13547 482 aaPredicted RBP23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 AAMPQ13685 434 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 C12orf42Q96LP6 360 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 P2RX7Q99572 595 aaKnown RBP23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 FEZ1Q99689 392 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 KIAA1683Q9H0B3 1180 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 MORF4L1Q9UBU8 362 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 GABRQQ9UN88 632 aa23.6■■□□□ 1.37
TSPAN4-209ENST00000409543 ZFYP08048 801 aaPredicted RBP23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 GUCY1A2P33402 732 aa23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 USP14P54578 494 aa23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 C12orf60Q5U649 245 aa23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 AMOTL1Q8IY63 956 aa23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 STRBPQ96SI9 672 aaKnown RBP23.59■■□□□ 1.37
TSPAN4-209ENST00000409543 USP17L12C9JPN9 530 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 USP17L21D6R901 530 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 RNF113AO15541 343 aaKnown RBP23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 GLRX3O76003 335 aaKnown RBP23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 FLT3LGP49771 235 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 HERVK_113P62684 666 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 SEPT2Q15019 361 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 SLC44A5Q8NCS7 719 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 PI4K2BQ8TCG2 481 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 ACER1Q8TDN7 264 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 OTUD7AQ8TE49 926 aaPredicted RBP23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 APPBP2Q92624 585 aa23.58■■□□□ 1.37
TSPAN4-209ENST00000409543 COA7Q96BR5 231 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms