RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SPECC1LQ69YQ0 1117 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 PALLDQ8WX93 1383 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 DNA2P51530 1060 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 EVCP57679 992 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 ST5P78524 1137 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 CCDC40Q4G0X9 1142 aa20.98■□□□□ 0.95
USP48-204ENST00000400301 CTAGE9A4FU28 777 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 ADKP55263 362 aaKnown RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 LETM2Q2VYF4 491 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 IFNAR1P17181 557 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 FAM98CQ17RN3 349 aaKnown RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 UBA5Q9GZZ9 404 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 INCENPQ9NQS7 918 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 PUF60Q9UHX1 559 aaKnown RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 AKR1B10O60218 316 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 FMNL1O95466 1100 aaPredicted RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 TFAP4Q01664 338 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 TRIM28Q13263 835 aaKnown RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 GOLGA1Q92805 767 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 RRP36Q96EU6 259 aaKnown RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 CTAGE15A4D2H0 777 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 CTAGE8P0CG41 777 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 CYLC1P35663 651 aaPredicted RBP20.97■□□□□ 0.95
USP48-204ENST00000400301 NR5A1Q13285 461 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 SUSD4Q5VX71 490 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 CTAGE6Q86UF2 777 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 CTAGE4Q8IX94 777 aa20.97■□□□□ 0.95
USP48-204ENST00000400301 GNA11P29992 359 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 TIGD1Q96MW7 591 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 PXDNQ92626 1479 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 LIFRP42702 1097 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 BLZF1Q9H2G9 400 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 JADE2Q9NQC1 790 aa20.96■□□□□ 0.95
USP48-204ENST00000400301 LUC7L2Q9Y383 392 aaKnown RBP20.96■□□□□ 0.95
USP48-204ENST00000400301 MAP9Q49MG5 647 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 CYB5R4Q7L1T6 521 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 TEX11Q8IYF3 940 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 GUCA1BQ9UMX6 200 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 MYO1BO43795 1136 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 HLA-DOAP06340 250 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 MCM6Q14566 821 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 FMR1NBQ8N0W7 255 aaPredicted RBP20.95■□□□□ 0.94
USP48-204ENST00000400301 CCNL1Q9UK58 526 aaPredicted RBP20.95■□□□□ 0.94
USP48-204ENST00000400301 ZNF335Q9H4Z2 1342 aaPredicted RBP20.95■□□□□ 0.94
USP48-204ENST00000400301 GTF2F1P35269 517 aaKnown RBP eCLIP20.95■□□□□ 0.941e-15■■□□□ 11.4
USP48-204ENST00000400301 ZNF219Q9P2Y4 722 aaPredicted RBP20.95■□□□□ 0.94
USP48-204ENST00000400301 A0A0G2JLW4 131 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 PLCG2P16885 1265 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 PTPN21Q16825 1174 aa20.95■□□□□ 0.94
USP48-204ENST00000400301 LMTK3Q96Q04 1460 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 FOXP1Q9H334 677 aaPredicted RBP20.94■□□□□ 0.94
USP48-204ENST00000400301 ETF1P62495 437 aaKnown RBP20.94■□□□□ 0.94
USP48-204ENST00000400301 UBE4AQ14139 1066 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 CT47A1Q5JQC4 288 aaPredicted RBP20.94■□□□□ 0.94
USP48-204ENST00000400301 IKBKBO14920 756 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 TOM1O60784 492 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 PAFAH1B1P43034 410 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 TNNI2P48788 182 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 SARM1Q6SZW1 724 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 CEP112Q8N8E3 955 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 CNBD1Q8NA66 436 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 WDR66Q8TBY9 1149 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 TAF4BQ92750 862 aa20.94■□□□□ 0.94
USP48-204ENST00000400301 PARP1P09874 1014 aaKnown RBP20.93■□□□□ 0.94
USP48-204ENST00000400301 DYNLL1P63167 89 aaKnown RBP20.93■□□□□ 0.94
USP48-204ENST00000400301 PAK1Q13153 545 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 SMAP1Q8IYB5 467 aaPredicted RBP20.93■□□□□ 0.94
USP48-204ENST00000400301 KIF20AO95235 890 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 MMP1P03956 469 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 PLA2G4DQ86XP0 818 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 EHBP1Q8NDI1 1231 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 TAB2Q9NYJ8 693 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 PPP2R3AQ06190 1150 aa20.93■□□□□ 0.94
USP48-204ENST00000400301 ATP1A3P13637 1013 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 LONRF3Q496Y0 759 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 CSRNP2Q9H175 543 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 MMRN2Q9H8L6 949 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 CCDC144BQ3MJ40 725 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 TRAPPC3LQ5T215 181 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 ZBTB9Q96C00 473 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 RNF26Q9BY78 433 aaPredicted RBP20.92■□□□□ 0.94
USP48-204ENST00000400301 RIPOR2Q9Y4F9 1068 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 MCM3P25205 808 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 ERCC6LQ2NKX8 1250 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 CDHR2Q9BYE9 1310 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 UFL1O94874 794 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 MAPKAPK5Q8IW41 473 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.92■□□□□ 0.94
USP48-204ENST00000400301 LRRC27Q9C0I9 530 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 TMOD2Q9NZR1 351 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 NEDD4P46934 1319 aa20.92■□□□□ 0.94
USP48-204ENST00000400301 PLCD1P51178 756 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 KRT79Q5XKE5 535 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 GRAMD1CQ8IYS0 662 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 TRIML1Q8N9V2 468 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 CYP19A1P11511 503 aaPredicted RBP20.91■□□□□ 0.94
USP48-204ENST00000400301 DESI2Q9BSY9 194 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 GTPBP4Q9BZE4 634 aaKnown RBP20.91■□□□□ 0.94
USP48-204ENST00000400301 SEPT11Q9NVA2 429 aaKnown RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms