RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 A0A1B0GUL7 405 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 MUM1L1Q5H9M0 696 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 ATAD2Q6PL18 1390 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 I3L4J1 428 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 TRAPPC10P48553 1259 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 CSRNP2Q9H175 543 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 SLC52A1Q9NWF4 448 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 PAXBP1Q9Y5B6 917 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 TCP10L2B9ZVM9 353 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 NOX5Q96PH1 765 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 SYNDIG1Q9H7V2 258 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 UBN2Q6ZU65 1347 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 RTL9Q8NET4 1388 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 PALM3A6NDB9 673 aaPredicted RBP13.8□□□□□ -0.2
CHD3-203ENST00000380358 TRIM68Q6AZZ1 485 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 CCDC105Q8IYK2 499 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 FAM76AQ8TAV0 307 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 CALUO43852 315 aaPredicted RBP13.8□□□□□ -0.2
CHD3-203ENST00000380358 HSPA2P54652 639 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 TRIM50Q86XT4 487 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 RSAD2Q8WXG1 361 aa13.8□□□□□ -0.2
CHD3-203ENST00000380358 H0YIN7 160 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 NR1I2O75469 434 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 PLEKHH1Q9ULM0 1364 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 CACNA2D3Q8IZS8 1091 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 LMCD1Q9NZU5 365 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 CYP2J2P51589 502 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 VSIG1Q86XK7 387 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 SULF1Q8IWU6 871 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 RSRC1Q96IZ7 334 aaKnown RBP13.79□□□□□ -0.2
CHD3-203ENST00000380358 FRMPD2Q68DX3 1309 aaPredicted RBP13.79□□□□□ -0.2
CHD3-203ENST00000380358 SDSP20132 328 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 ATICP31939 592 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 CTDSPL2Q05D32 466 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 TBC1D8BQ0IIM8 1120 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 DPP8Q6V1X1 898 aaPredicted RBP13.79□□□□□ -0.2
CHD3-203ENST00000380358 LRPPRCP42704 1394 aaKnown RBP13.79□□□□□ -0.2
CHD3-203ENST00000380358 CEP104O60308 925 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 ABCB4P21439 1286 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 ARHGEF16Q5VV41 709 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 PPP4R1Q8TF05 950 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 FAM89AQ96GI7 184 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 HMG20BQ9P0W2 317 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 PGBD1Q96JS3 809 aa13.79□□□□□ -0.2
CHD3-203ENST00000380358 APBA3O96018 575 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 ZNF467Q7Z7K2 595 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 RBSNQ9H1K0 784 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 CCNL1Q9UK58 526 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 EXOC3O60645 756 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 FAM98CQ17RN3 349 aaKnown RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 HELLSQ9NRZ9 838 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 GRM8O00222 908 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 NDUFB9Q9Y6M9 179 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 NOP14P78316 857 aaKnown RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 KRBA2Q6ZNG9 492 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 NBPF11Q86T75 865 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 PALM2Q8IXS6 379 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 PLCG2P16885 1265 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 ATF7P17544 494 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 GBP1P32455 592 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 UBL4BQ8N7F7 174 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 GABPB2Q8TAK5 448 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 ZNF594Q96JF6 807 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 GAPVD1Q14C86 1478 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 PNMA8AQ86V59 439 aaPredicted RBP13.78□□□□□ -0.2
CHD3-203ENST00000380358 MAPKAPK5Q8IW41 473 aa13.78□□□□□ -0.2
CHD3-203ENST00000380358 RBM46Q8TBY0 533 aaKnown RBP13.77□□□□□ -0.2
CHD3-203ENST00000380358 BLZF1Q9H2G9 400 aa13.77□□□□□ -0.2
CHD3-203ENST00000380358 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.2
CHD3-203ENST00000380358 PIK3R4Q99570 1358 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 ABI1Q8IZP0 508 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 TGFBRAP1Q8WUH2 860 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 TSR3Q9UJK0 312 aaKnown RBP13.77□□□□□ -0.21
CHD3-203ENST00000380358 HNRNPCL2B2RXH8 293 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 HNRNPCL1O60812 293 aaKnown RBP13.77□□□□□ -0.21
CHD3-203ENST00000380358 NOLC1Q14978 699 aaKnown RBP eCLIP13.77□□□□□ -0.211e-49■■■■■ 70.7
CHD3-203ENST00000380358 KRT12Q99456 494 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 SH2D4AQ9H788 454 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 BTG4Q9NY30 223 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 NUB1Q9Y5A7 615 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 CSADQ9Y600 493 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 U2AF2P26368 475 aaKnown RBP eCLIP13.77□□□□□ -0.21
CHD3-203ENST00000380358 ECE1P42892 770 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 ANGPTL3Q9Y5C1 460 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 PCDHB13Q9Y5F0 798 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 MSH6P52701 1360 aa13.77□□□□□ -0.21
CHD3-203ENST00000380358 RAPH1Q70E73 1250 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 THRAP3Q9Y2W1 955 aaKnown RBP13.76□□□□□ -0.21
CHD3-203ENST00000380358 PLEKHH2Q8IVE3 1493 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 NVLO15381 856 aaKnown RBP13.76□□□□□ -0.21
CHD3-203ENST00000380358 HERC4Q5GLZ8 1057 aaPredicted RBP13.76□□□□□ -0.21
CHD3-203ENST00000380358 TTBK2Q6IQ55 1244 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 ANGPTL8Q6UXH0 198 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 CMTR1Q8N1G2 835 aaKnown RBP13.76□□□□□ -0.21
CHD3-203ENST00000380358 STK24Q9Y6E0 443 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 USH1CQ9Y6N9 552 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 POLR2DO15514 142 aaKnown RBP13.76□□□□□ -0.21
CHD3-203ENST00000380358 OPHN1O60890 802 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 BMP15O95972 392 aa13.76□□□□□ -0.21
CHD3-203ENST00000380358 SLC1A4P43007 532 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms