RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 MYD88Q99836 296 aa9.92□□□□□ -0.82
CD44-205ENST00000352818 USP26Q9BXU7 913 aa9.92□□□□□ -0.82
CD44-205ENST00000352818 SENP6Q9GZR1 1112 aaPredicted RBP9.92□□□□□ -0.82
CD44-205ENST00000352818 CD320Q9NPF0 282 aa9.92□□□□□ -0.82
CD44-205ENST00000352818 ZNF112Q9UJU3 913 aa9.92□□□□□ -0.82
CD44-205ENST00000352818 CACNA1BQ00975 2339 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 PCCAP05165 728 aaPredicted RBP9.91□□□□□ -0.82
CD44-205ENST00000352818 IL1R1P14778 569 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 PBX2P40425 430 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 CASP7P55210 303 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 RABEP1Q15276 862 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 MIGA2Q7L4E1 593 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 ANKRD13CQ8N6S4 541 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 TTLL11Q8NHH1 800 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 PI4K2BQ8TCG2 481 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 TIFAQ96CG3 184 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 RNPC3Q96LT9 517 aaKnown RBP9.91□□□□□ -0.82
CD44-205ENST00000352818 FBXL18Q96ME1 805 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 BICC1Q9H694 974 aaKnown RBP9.91□□□□□ -0.82
CD44-205ENST00000352818 SERPINA10Q9UK55 444 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 EPG5Q9HCE0 2579 aa9.91□□□□□ -0.82
CD44-205ENST00000352818 A0A0G2JLL6 359 aaPredicted RBP9.9□□□□□ -0.82
CD44-205ENST00000352818 PI4K2BG5E9Z4 385 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 CXCL11O14625 94 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 CTSWP56202 376 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 CACNB2Q08289 660 aaPredicted RBP9.9□□□□□ -0.82
CD44-205ENST00000352818 PRRT2Q7Z6L0 340 aaPredicted RBP9.9□□□□□ -0.82
CD44-205ENST00000352818 CLASRPQ8N2M8 674 aaKnown RBP9.9□□□□□ -0.82
CD44-205ENST00000352818 GPATCH3Q96I76 525 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 CDC5LQ99459 802 aaKnown RBP9.9□□□□□ -0.82
CD44-205ENST00000352818 ESYT1Q9BSJ8 1104 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 PDLIM7Q9NR12 457 aa9.9□□□□□ -0.82
CD44-205ENST00000352818 H7C1W4 665 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 TLL1O43897 1013 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 GLRX3O76003 335 aaKnown RBP9.89□□□□□ -0.83
CD44-205ENST00000352818 CHMLP26374 656 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 NOL9Q5SY16 702 aaKnown RBP9.89□□□□□ -0.83
CD44-205ENST00000352818 C15orf52Q6ZUT6 534 aaKnown RBP9.89□□□□□ -0.83
CD44-205ENST00000352818 ANKS1AQ92625 1134 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 GAS2L1Q99501 681 aaPredicted RBP9.89□□□□□ -0.83
CD44-205ENST00000352818 IL1RAPL2Q9NP60 686 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 COPRSQ9NQ92 184 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 TTF2Q9UNY4 1162 aaKnown RBP9.89□□□□□ -0.83
CD44-205ENST00000352818 SLC45A1Q9Y2W3 748 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 PLXNB2O15031 1838 aa9.89□□□□□ -0.83
CD44-205ENST00000352818 MYO15AQ9UKN7 3530 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 PKD1L2Q7Z442 2459 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 PRR33A8MZF0 331 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 DDIT3P35638 169 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 CRKP46108 304 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 RFX5P48382 616 aaPredicted RBP9.88□□□□□ -0.83
CD44-205ENST00000352818 FOXK2Q01167 660 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 OS9Q13438 667 aaPredicted RBP9.88□□□□□ -0.83
CD44-205ENST00000352818 NBR1Q14596 966 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 NFKBIBQ15653 356 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 FAM110CQ1W6H9 321 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 CCDC191Q8NCU4 936 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 ZNF341Q9BYN7 854 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 PRDM5Q9NQX1 630 aaPredicted RBP9.88□□□□□ -0.83
CD44-205ENST00000352818 CWC25Q9NXE8 425 aaPredicted RBP9.88□□□□□ -0.83
CD44-205ENST00000352818 PRKAG2Q9UGJ0 569 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 CIZ1Q9ULV3 898 aaPredicted RBP9.88□□□□□ -0.83
CD44-205ENST00000352818 ATP11BQ9Y2G3 1177 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 MYO9BQ13459 2157 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 RFX7Q2KHR2 1363 aa9.88□□□□□ -0.83
CD44-205ENST00000352818 CHD8Q9HCK8 2581 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.87□□□□□ -0.83
CD44-205ENST00000352818 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.87□□□□□ -0.83
CD44-205ENST00000352818 GRXCR1A8MXD5 290 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 K7ELQ4 463 aaPredicted RBP9.87□□□□□ -0.83
CD44-205ENST00000352818 CYP2B6P20813 491 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 TNNI2P48788 182 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 ANAPC15P60006 121 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 G3BP1Q13283 466 aaKnown RBP eCLIP9.87□□□□□ -0.83
CD44-205ENST00000352818 CCL14Q16627 93 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 TSHZ3Q63HK5 1081 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 PBX4Q9BYU1 374 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 ECHDC1Q9NTX5 307 aa9.87□□□□□ -0.83
CD44-205ENST00000352818 PA2G4Q9UQ80 394 aaKnown RBP9.87□□□□□ -0.83
CD44-205ENST00000352818 ZFHX2Q9C0A1 2572 aaPredicted RBP9.87□□□□□ -0.83
CD44-205ENST00000352818 SPEF2Q9C093 1822 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 TRIM6-TRIM34B2RNG4 842 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 PEX10O60683 326 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 TAF5LO75529 589 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 IFIT2P09913 472 aaKnown RBP9.86□□□□□ -0.83
CD44-205ENST00000352818 DMDP11532 3685 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 IGFBP4P22692 258 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 MCCP23508 829 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 CHRNDQ07001 517 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 SNX17Q15036 470 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 TRIM60Q495X7 471 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 EPHA10Q5JZY3 1008 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 TREML2Q5T2D2 321 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 GADL1Q6ZQY3 521 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 UBE3BQ7Z3V4 1068 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 FAM83AQ86UY5 434 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 SMCR8Q8TEV9 937 aaPredicted RBP9.86□□□□□ -0.83
CD44-205ENST00000352818 USP6NLQ92738 828 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 CHMP5Q9NZZ3 219 aa9.86□□□□□ -0.83
CD44-205ENST00000352818 AFG3L2Q9Y4W6 797 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms