RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NPM3O75607 178 aaKnown RBP18.05■□□□□ 0.48
LIMS1-202ENST00000338045 IFNAR1P17181 557 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 PICALMQ13492 652 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 IFFO2Q5TF58 517 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 RCSD1Q6JBY9 416 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 TTC6Q86TZ1 520 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 CCDC144CPQ8IYA2 1237 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 FANCBQ8NB91 859 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 TMEM87AQ8NBN3 555 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 IDI2Q9BXS1 227 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 STK36Q9NRP7 1315 aa18.05■□□□□ 0.48
LIMS1-202ENST00000338045 PSMD14O00487 310 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 NMT2O60551 498 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 PPFIA3O75145 1194 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 DDAH1O94760 285 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 TROAPQ12815 778 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 RESTQ13127 1097 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 CCDC178Q5BJE1 867 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 CATIPQ7Z7H3 387 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 DGKHQ86XP1 1220 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 NIM1KQ8IY84 436 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 ZNF444Q8N0Y2 327 aaPredicted RBP18.04■□□□□ 0.48
LIMS1-202ENST00000338045 IL17RBQ9NRM6 502 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 PCDHAC2Q9Y5I4 1007 aa18.04■□□□□ 0.48
LIMS1-202ENST00000338045 NFKBIEO00221 500 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 PRPF40AO75400 957 aaKnown RBP18.03■□□□□ 0.48
LIMS1-202ENST00000338045 CALM1P0DP23 149 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 CALM2P0DP24 149 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 CALM3P0DP25 149 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 NFIAQ12857 509 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 FERMT3Q86UX7 667 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 ZSCAN16Q9H4T2 348 aaPredicted RBP18.03■□□□□ 0.48
LIMS1-202ENST00000338045 LTBP3Q9NS15 1303 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 RAD17O75943 681 aa18.03■□□□□ 0.48
LIMS1-202ENST00000338045 FOXD4L6Q3SYB3 417 aaPredicted RBP18.03■□□□□ 0.48
LIMS1-202ENST00000338045 FOXD4L3Q6VB84 417 aaPredicted RBP18.03■□□□□ 0.48
LIMS1-202ENST00000338045 TCHHQ07283 1943 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 FMNL1O95466 1100 aaPredicted RBP18.02■□□□□ 0.48
LIMS1-202ENST00000338045 TSPY3P0CV98 308 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 TSPY8P0CW00 308 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 RBM5P52756 815 aaKnown RBP eCLIP18.02■□□□□ 0.48
LIMS1-202ENST00000338045 DNM1Q05193 864 aaKnown RBP18.02■□□□□ 0.48
LIMS1-202ENST00000338045 KLHL40Q2TBA0 621 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 FBXO18Q8NFZ0 1043 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 NEDD1Q8NHV4 660 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 NUP133Q8WUM0 1156 aa18.02■□□□□ 0.48
LIMS1-202ENST00000338045 CFAP100Q494V2 611 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 NBPF11Q86T75 865 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 KLHL34Q8N239 644 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 PHKBQ93100 1093 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 C8orf76Q96K31 380 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 FAM198AQ9UFP1 575 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 BCS1LQ9Y276 419 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 CNPY2Q9Y2B0 182 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 PLIN4Q96Q06 1357 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 NOVP48745 357 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 AGBL3Q8NEM8 1001 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 EHD4Q9H223 541 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 RBM28Q9NW13 759 aaKnown RBP18.01■□□□□ 0.47
LIMS1-202ENST00000338045 SERPINB13Q9UIV8 391 aa18.01■□□□□ 0.47
LIMS1-202ENST00000338045 CXCL9Q07325 125 aa18■□□□□ 0.47
LIMS1-202ENST00000338045 SSRP1Q08945 709 aaKnown RBP18■□□□□ 0.47
LIMS1-202ENST00000338045 CRACR2BQ8N4Y2 399 aaPredicted RBP18■□□□□ 0.47
LIMS1-202ENST00000338045 MAP3K14Q99558 947 aa18■□□□□ 0.47
LIMS1-202ENST00000338045 DHX36Q9H2U1 1008 aaKnown RBP18■□□□□ 0.47
LIMS1-202ENST00000338045 SWAP70Q9UH65 585 aa18■□□□□ 0.47
LIMS1-202ENST00000338045 TAOK2Q9UL54 1235 aa18■□□□□ 0.47
LIMS1-202ENST00000338045 HLA-DOAP06340 250 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 FUT2Q10981 343 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 USP48Q86UV5 1035 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 PRMT6Q96LA8 375 aaPredicted RBP17.99■□□□□ 0.47
LIMS1-202ENST00000338045 ALG1Q9BT22 464 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 GDPD2Q9HCC8 539 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 HDAC9Q9UKV0 1011 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 DDX49Q9Y6V7 483 aaKnown RBP17.99■□□□□ 0.47
LIMS1-202ENST00000338045 COL2A1P02458 1487 aaPredicted RBP17.99■□□□□ 0.47
LIMS1-202ENST00000338045 ARFGEF1Q9Y6D6 1849 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 SPDYE2BA6NHP3 402 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 SPDYE6P0CI01 402 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 FOSBP53539 338 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 KRT85P78386 507 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 FAM173BQ6P4H8 233 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 ZFPM1Q8IX07 1006 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 NLGN2Q8NFZ4 835 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 JDP2Q8WYK2 163 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 SLC26A6Q9BXS9 759 aa17.99■□□□□ 0.47
LIMS1-202ENST00000338045 ZBTB12Q9Y330 459 aaPredicted RBP17.99■□□□□ 0.47
LIMS1-202ENST00000338045 ENTPD3O75355 529 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 CACNB3P54284 484 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 GUCY1B3Q02153 619 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 CSPP1Q1MSJ5 1256 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 TRIM22Q8IYM9 498 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 MTMR14Q8NCE2 650 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 WASF1Q92558 559 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 AIFM3Q96NN9 605 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 RNF26Q9BY78 433 aaPredicted RBP17.98■□□□□ 0.47
LIMS1-202ENST00000338045 TDRD3Q9H7E2 651 aaKnown RBP17.98■□□□□ 0.47
LIMS1-202ENST00000338045 KAT14Q9H8E8 782 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 SPON1Q9HCB6 807 aa17.98■□□□□ 0.47
LIMS1-202ENST00000338045 ATRNL1Q5VV63 1379 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms