RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FAM13CQ8NE31 585 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 TMEM40Q8WWA1 233 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 SHDQ96IW2 340 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 FAM83CQ9BQN1 747 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 FOXQ1Q9C009 403 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 FBRSQ9HAH7 460 aa5.27□□□□□ -1.57
HMGB1-201ENST00000326004 SLC22A31A6NKX4 558 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 STK10O94804 968 aaKnown RBP5.26□□□□□ -1.57
HMGB1-201ENST00000326004 CST3P01034 146 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-201ENST00000326004 NFKBIBQ15653 356 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 NKG7Q16617 165 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 TNNI3KQ59H18 835 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 CDCP2Q5VXM1 449 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 OVOS1Q6IE37 1185 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 SEZ6L2Q6UXD5 910 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 CCDC81Q6ZN84 652 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 PRR23CQ6ZRP0 262 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 LSRQ86X29 649 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-201ENST00000326004 TAB3Q8N5C8 712 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-201ENST00000326004 GIMAP7Q8NHV1 300 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 UBXN4Q92575 508 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 TM9SF2Q99805 663 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 CNNM2Q9H8M5 875 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 TPSG1Q9NRR2 321 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 KLHL3Q9UH77 587 aa5.26□□□□□ -1.57
HMGB1-201ENST00000326004 TNFRSF10CO14798 259 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 H2AFB1P0C5Y9 115 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 H2AFB2P0C5Z0 115 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 NME1P15531 152 aaKnown RBP5.25□□□□□ -1.57
HMGB1-201ENST00000326004 CCNFP41002 786 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 PRAMEF13Q5VWM6 474 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 INTS3Q68E01 1043 aaKnown RBP5.25□□□□□ -1.57
HMGB1-201ENST00000326004 ARMCX6Q7L4S7 300 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 NLRC3Q7RTR2 1065 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 UBE3DQ7Z6J8 389 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 C19orf47Q8N9M1 422 aaKnown RBP5.25□□□□□ -1.57
HMGB1-201ENST00000326004 ANAPC16Q96DE5 110 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 ATG4CQ96DT6 458 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 PSMG3-AS1Q96PY0 264 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 HIRIP3Q9BW71 556 aaPredicted RBP5.25□□□□□ -1.57
HMGB1-201ENST00000326004 STOML1Q9UBI4 398 aa5.25□□□□□ -1.57
HMGB1-201ENST00000326004 CHURC1-FNTBB4DL54 471 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 MSTNO14793 375 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 GSC2O15499 205 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 DYNC1LI2O43237 492 aaPredicted RBP5.24□□□□□ -1.57
HMGB1-201ENST00000326004 DNAJA2O60884 412 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 IGHA1P01876 353 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 PROCP04070 461 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 RAG1P15918 1043 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 GTF2F1P35269 517 aaKnown RBP eCLIP5.24□□□□□ -1.57
HMGB1-201ENST00000326004 ARSHQ5FYA8 562 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 CYB5D2Q8WUJ1 264 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 CCDC74BQ96LY2 380 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 C7orf69Q9H7B7 122 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 ZNF408Q9H9D4 720 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 C1GALT1Q9NS00 363 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 USP35Q9P2H5 1018 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 PRKAG3Q9UGI9 489 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 SLC12A7Q9Y666 1083 aa5.24□□□□□ -1.57
HMGB1-201ENST00000326004 HMX2A2RU54 273 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 UPK3BL1B0FP48 263 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 UPK3BL2E5RIL1 263 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 RGS13O14921 159 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 GUCY2CP25092 1073 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 CASP7P55210 303 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 RBL2Q08999 1139 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 SOGA3Q5TF21 947 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 NBPF6Q5VWK0 638 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 ZNF746Q6NUN9 644 aaPredicted RBP5.23□□□□□ -1.57
HMGB1-201ENST00000326004 SLC51AQ86UW1 340 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 CKAP2LQ8IYA6 745 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 PHACTR4Q8IZ21 702 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 NBPF4Q96M43 638 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 SPOCK3Q9BQ16 436 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 ANTXR1Q9H6X2 564 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 PRDM10Q9NQV6 1147 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 PPP1R1BQ9UD71 204 aaPredicted RBP5.23□□□□□ -1.57
HMGB1-201ENST00000326004 MRVI1Q9Y6F6 885 aa5.23□□□□□ -1.57
HMGB1-201ENST00000326004 ETFBP38117 255 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 ETV3P41162 512 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 CYP27A1Q02318 531 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 CDK5R2Q13319 367 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 DOC2BQ14184 412 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 RNF43Q68DV7 783 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 LETMD1Q6P1Q0 360 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 ZAR1Q86SH2 424 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 FAM169BQ8N8A8 192 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 DHX38Q92620 1227 aaKnown RBP5.22□□□□□ -1.57
HMGB1-201ENST00000326004 TBC1D32Q96NH3 1257 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 MIPEPQ99797 713 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 DPH2Q9BQC3 489 aaPredicted RBP5.22□□□□□ -1.57
HMGB1-201ENST00000326004 DBNDD2Q9BQY9 259 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.22□□□□□ -1.571e-6■■■■□ 22.9
HMGB1-201ENST00000326004 LGR6Q9HBX8 967 aa5.22□□□□□ -1.57
HMGB1-201ENST00000326004 R3HCC1Q9Y3T6 440 aaKnown RBP5.22□□□□□ -1.57
HMGB1-201ENST00000326004 SMAD7O15105 426 aaKnown RBP5.21□□□□□ -1.58
HMGB1-201ENST00000326004 GBP1P32455 592 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 NFIAQ12857 509 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 CPSF6Q16630 551 aaKnown RBP eCLIP5.21□□□□□ -1.58
HMGB1-201ENST00000326004 RSPO4Q2I0M5 234 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms