RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TTLL11Q8NHH1 800 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 ARMT1Q9H993 441 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 TCP11L1Q9NUJ3 509 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 MAPK8IP1Q9UQF2 711 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 ZNF532Q9HCE3 1301 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 KCNQ2O43526 872 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 CLCN6P51797 869 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 SPTY2D1Q68D10 685 aaPredicted RBP17.31■□□□□ 0.36
SHH-201ENST00000297261 CLEC17AQ6ZS10 378 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 ISCA1Q9BUE6 129 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 PHKA1P46020 1223 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 CFAP58Q5T655 872 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 NKX1-1Q15270 411 aaPredicted RBP17.31■□□□□ 0.36
SHH-201ENST00000297261 PI16Q6UXB8 463 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 PPP1R13BQ96KQ4 1090 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 TSG101Q99816 390 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 CRNKL1Q9BZJ0 848 aaKnown RBP17.31■□□□□ 0.36
SHH-201ENST00000297261 ANKRD2Q9GZV1 360 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 PSMA7O14818 248 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 SUSD4Q5VX71 490 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 KRT23Q9C075 422 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 UBA5Q9GZZ9 404 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 STAT6P42226 847 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 VPS36Q86VN1 386 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 DSCC1Q9BVC3 393 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 PDE11AQ9HCR9 933 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 PPP2R2CQ9Y2T4 447 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 FGFR1OPO95684 399 aaKnown RBP17.3■□□□□ 0.36
SHH-201ENST00000297261 FOXO4P98177 505 aa17.3■□□□□ 0.36
SHH-201ENST00000297261 ZNF622Q969S3 477 aaKnown RBP eCLIP17.3■□□□□ 0.36
SHH-201ENST00000297261 HSPD1P10809 573 aaKnown RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 ARID5AQ03989 594 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 GOLGA8FQ08AF8 430 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 GOLGA8DPQ0D2H9 430 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 RMND1Q9NWS8 449 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 SETD1AO15047 1707 aaKnown RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 GSTTP1A0A1W2PQM5 241 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 ZSCAN20P17040 1043 aaPredicted RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 KRT9P35527 623 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 TCERG1LQ5VWI1 586 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 SPECC1LQ69YQ0 1117 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 ADALQ6DHV7 355 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 SLF1Q9BQI6 1058 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 FTOQ9C0B1 505 aaKnown RBP eCLIP17.29■□□□□ 0.36
SHH-201ENST00000297261 CNNM2Q9H8M5 875 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 HPDP32754 393 aaPredicted RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 PNOCQ13519 176 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 ZRSR2Q15696 482 aaKnown RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 CPLX4Q7Z7G2 160 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 ZSCAN29Q8IWY8 852 aaPredicted RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 LDHCP07864 332 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 GNAT2P19087 354 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 BCAMP50895 628 aa17.29■□□□□ 0.36
SHH-201ENST00000297261 MKRN1Q9UHC7 482 aaKnown RBP17.29■□□□□ 0.36
SHH-201ENST00000297261 BAG3O95817 575 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 BRD3Q15059 726 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 RABL6Q3YEC7 729 aaPredicted RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 PSMB7Q99436 277 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 TSPY2A6NKD2 308 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 B4E1Z4 1266 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 RPS8P62241 208 aaKnown RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 FAM114A1Q8IWE2 563 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 DENND2AQ9ULE3 1009 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 TTF2Q9UNY4 1162 aaKnown RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 PSDA5PKW4 1024 aaPredicted RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 E7EWF7 191 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 LIG3P49916 1009 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 NAA25Q14CX7 972 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 PAXIP1Q6ZW49 1069 aaPredicted RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 ZNF444Q8N0Y2 327 aaPredicted RBP17.28■□□□□ 0.36
SHH-201ENST00000297261 FANCLQ9NW38 375 aa17.28■□□□□ 0.36
SHH-201ENST00000297261 PNMA6AP0CW24 399 aaPredicted RBP17.27■□□□□ 0.36
SHH-201ENST00000297261 HIBADHP31937 336 aaKnown RBP17.27■□□□□ 0.36
SHH-201ENST00000297261 CHRNDQ07001 517 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 GOLGA5Q8TBA6 731 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 ESR2Q92731 530 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 PCDHA7Q9UN72 937 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 KIF1AQ12756 1690 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 GOLGA6BA6NDN3 693 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 MSL1Q68DK7 614 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 HINFPQ9BQA5 517 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 CABP5Q9NP86 173 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 TRPC5Q9UL62 973 aaPredicted RBP17.27■□□□□ 0.36
SHH-201ENST00000297261 RRP15Q9Y3B9 282 aaKnown RBP17.27■□□□□ 0.36
SHH-201ENST00000297261 TLDC2A0PJX2 215 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 GYG1P46976 350 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 DPCR1Q3MIW9 517 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 MYSM1Q5VVJ2 828 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 GPIHBP1Q8IV16 184 aa17.27■□□□□ 0.36
SHH-201ENST00000297261 NALCNQ8IZF0 1738 aa17.27■□□□□ 0.35
SHH-201ENST00000297261 PFKFB1P16118 471 aa17.27■□□□□ 0.35
SHH-201ENST00000297261 NDUFA8P51970 172 aa17.27■□□□□ 0.35
SHH-201ENST00000297261 STAMQ92783 540 aa17.27■□□□□ 0.35
SHH-201ENST00000297261 KAZALD1Q96I82 304 aa17.27■□□□□ 0.35
SHH-201ENST00000297261 QTRT2Q9H974 415 aaKnown RBP17.27■□□□□ 0.35
SHH-201ENST00000297261 SPATA31A1Q5TZJ5 1347 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 GYS2P54840 703 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 PDE4BQ07343 736 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 UBE4AQ14139 1066 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 ZNF827Q17R98 1081 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms