RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SNAPC2Q13487 334 aa20.02■□□□□ 0.8
SDCBP-201ENST00000260130 DYNLL2Q96FJ2 89 aa20.02■□□□□ 0.8
SDCBP-201ENST00000260130 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.02■□□□□ 0.8
SDCBP-201ENST00000260130 FOXN1O15353 648 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 CERKLQ49MI3 558 aaPredicted RBP20.01■□□□□ 0.79
SDCBP-201ENST00000260130 CWC27Q6UX04 472 aaKnown RBP20.01■□□□□ 0.79
SDCBP-201ENST00000260130 GINM1Q9NU53 330 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 RNF186Q9NXI6 227 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 SWAP70Q9UH65 585 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 KCNH4Q9UQ05 1017 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 AFG3L2Q9Y4W6 797 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 SMIM22K7EJ46 135 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 GDF11O95390 407 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 CETPP11597 493 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 JAG1P78504 1218 aa20.01■□□□□ 0.79
SDCBP-201ENST00000260130 CCL15-CCL14A0A0B4J2E2 113 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 USP17L5A8MUK1 530 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 MINDY4BA8MYZ0 360 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 CXCL11O14625 94 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 TRPA1O75762 1119 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 CCL15Q16663 113 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 VPS53Q5VIR6 699 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 ZNF589Q86UQ0 364 aaPredicted RBP20■□□□□ 0.79
SDCBP-201ENST00000260130 CCDC84Q86UT8 332 aaPredicted RBP20■□□□□ 0.79
SDCBP-201ENST00000260130 IFNL1Q8IU54 200 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 BRI3BPQ8WY22 251 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 NAPBQ9H115 298 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 CCDC171Q6TFL3 1326 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 FOXP2O15409 715 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 MFAP1P55081 439 aaKnown RBP20■□□□□ 0.79
SDCBP-201ENST00000260130 SLC44A5Q8NCS7 719 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 PTPN18Q99952 460 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 TBC1D2Q9BYX2 928 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 SAGE1Q9NXZ1 904 aa20■□□□□ 0.79
SDCBP-201ENST00000260130 IGF2BP3O00425 579 aaKnown RBP eCLIP19.99■□□□□ 0.79
SDCBP-201ENST00000260130 SHROOM1Q2M3G4 852 aaPredicted RBP19.99■□□□□ 0.79
SDCBP-201ENST00000260130 OTUD7BQ6GQQ9 843 aa19.99■□□□□ 0.79
SDCBP-201ENST00000260130 C16orf86Q6ZW13 317 aa19.99■□□□□ 0.79
SDCBP-201ENST00000260130 ZBTB21Q9ULJ3 1066 aa19.99■□□□□ 0.79
SDCBP-201ENST00000260130 ALDH1A1P00352 501 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 GH2P01242 217 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 CDK8P49336 464 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 CTCFP49711 727 aaPredicted RBP19.98■□□□□ 0.79
SDCBP-201ENST00000260130 ABCB5Q2M3G0 1257 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 BAZ2AQ9UIF9 1905 aaKnown RBP19.98■□□□□ 0.79
SDCBP-201ENST00000260130 DOCK1Q14185 1865 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 AS3MTQ9HBK9 375 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 CABP5Q9NP86 173 aa19.98■□□□□ 0.79
SDCBP-201ENST00000260130 TRIM75PA6NK02 468 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 HSPD1P10809 573 aaKnown RBP19.97■□□□□ 0.79
SDCBP-201ENST00000260130 ZNF280CQ8ND82 737 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 TSKSQ9UJT2 592 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 CHMLP26374 656 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 SPP2Q13103 211 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 ALX1Q15699 326 aa19.97■□□□□ 0.79
SDCBP-201ENST00000260130 WDR18Q9BV38 432 aa19.96■□□□□ 0.79
SDCBP-201ENST00000260130 ROBO3Q96MS0 1386 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 A0A0G2JLL6 359 aaPredicted RBP19.95■□□□□ 0.78
SDCBP-201ENST00000260130 HSPA8P11142 646 aaKnown RBP19.95■□□□□ 0.78
SDCBP-201ENST00000260130 BMP2KLQ5H9B9 411 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 PRRT2Q7Z6L0 340 aaPredicted RBP19.95■□□□□ 0.78
SDCBP-201ENST00000260130 STK11IPQ8N1F8 1099 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 CCDC17Q96LX7 622 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 LAMB1P07942 1786 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 MPHOSPH10O00566 681 aaKnown RBP19.95■□□□□ 0.78
SDCBP-201ENST00000260130 FGAP02671 866 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 PPARAQ07869 468 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 MOGSQ13724 837 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 RAB3GAP1Q15042 981 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 FAM43AQ8N2R8 423 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 RUFY2Q8WXA3 655 aa19.95■□□□□ 0.78
SDCBP-201ENST00000260130 BTBD19C9JJ37 291 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 LBX1P52954 281 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 FASTKD5Q7L8L6 764 aaKnown RBP19.94■□□□□ 0.78
SDCBP-201ENST00000260130 MKNK2Q9HBH9 465 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 ZNF287Q9HBT7 754 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 TBC1D8O95759 1140 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 SLC3A2P08195 630 aaKnown RBP19.94■□□□□ 0.78
SDCBP-201ENST00000260130 CFHR5Q9BXR6 569 aa19.94■□□□□ 0.78
SDCBP-201ENST00000260130 AKR1B1P15121 316 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 GUCY1A2P33402 732 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 TMEM179Q6ZVK1 233 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 ANKRD23Q86SG2 305 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 IL25Q9H293 177 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 ZCCHC17Q9NP64 241 aaKnown RBP19.93■□□□□ 0.78
SDCBP-201ENST00000260130 BACE1P56817 501 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 SEPT2Q15019 361 aa19.93■□□□□ 0.78
SDCBP-201ENST00000260130 ZMYM6O95789 1325 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 RAD50Q92878 1312 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 ATAD5Q96QE3 1844 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 USP17L10C9JJH3 530 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 PDE4BQ07343 736 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 GADL1Q6ZQY3 521 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 ANAPC4Q9UJX5 808 aa19.92■□□□□ 0.78
SDCBP-201ENST00000260130 C19orf81C9J6K1 198 aa19.91■□□□□ 0.78
SDCBP-201ENST00000260130 RASA1P20936 1047 aa19.91■□□□□ 0.78
SDCBP-201ENST00000260130 HMGCS2P54868 508 aa19.91■□□□□ 0.78
SDCBP-201ENST00000260130 MTMR2Q13614 643 aa19.91■□□□□ 0.78
SDCBP-201ENST00000260130 SH3D19Q5HYK7 790 aa19.91■□□□□ 0.78
SDCBP-201ENST00000260130 GPAT2Q6NUI2 795 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms