RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 TDRD3Q9H7E2 651 aaKnown RBP26.43■■□□□ 1.82
CDX1-201ENST00000231656 FGRP09769 529 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 GMPSP49915 693 aaPredicted RBP26.42■■□□□ 1.82
CDX1-201ENST00000231656 PLCD1P51178 756 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 GPR162Q16538 588 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 DPF2Q92785 391 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 IDI2Q9BXS1 227 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 TOMM22Q9NS69 142 aa26.42■■□□□ 1.82
CDX1-201ENST00000231656 SHTN1A0MZ66 631 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 H3BQV1 296 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 SLC3A2P08195 630 aaKnown RBP26.41■■□□□ 1.82
CDX1-201ENST00000231656 PCP11498 1178 aaKnown RBP26.41■■□□□ 1.82
CDX1-201ENST00000231656 MMP14P50281 582 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 CACNB3P54284 484 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 KRT85P78386 507 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 IFFO2Q5TF58 517 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 FAM173BQ6P4H8 233 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 IGDCC4Q8TDY8 1250 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 RNF181Q9P0P0 153 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 ROBO3Q96MS0 1386 aa26.41■■□□□ 1.82
CDX1-201ENST00000231656 FDPSP14324 419 aaKnown RBP26.41■■□□□ 1.82
CDX1-201ENST00000231656 ZNF280AP59817 542 aaPredicted RBP26.41■■□□□ 1.82
CDX1-201ENST00000231656 RRP12Q5JTH9 1297 aaKnown RBP26.41■■□□□ 1.82
CDX1-201ENST00000231656 DHX16O60231 1041 aaKnown RBP26.4■■□□□ 1.82
CDX1-201ENST00000231656 KDM4AO75164 1064 aa26.4■■□□□ 1.82
CDX1-201ENST00000231656 OSBPL5Q9H0X9 879 aaPredicted RBP26.4■■□□□ 1.82
CDX1-201ENST00000231656 MYOZ2Q9NPC6 264 aa26.4■■□□□ 1.82
CDX1-201ENST00000231656 ZSWIM5Q9P217 1185 aa26.4■■□□□ 1.82
CDX1-201ENST00000231656 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.4■■□□□ 1.82
CDX1-201ENST00000231656 ZSCAN16Q9H4T2 348 aaPredicted RBP26.39■■□□□ 1.82
CDX1-201ENST00000231656 LY9Q9HBG7 655 aa26.39■■□□□ 1.82
CDX1-201ENST00000231656 FAM198AQ9UFP1 575 aa26.39■■□□□ 1.82
CDX1-201ENST00000231656 PDE4BQ07343 736 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 SGMS1Q86VZ5 419 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 SYAP1Q96A49 352 aaPredicted RBP26.38■■□□□ 1.81
CDX1-201ENST00000231656 DYNLL2Q96FJ2 89 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 ZBED3Q96IU2 234 aaPredicted RBP26.38■■□□□ 1.81
CDX1-201ENST00000231656 SENP2Q9HC62 589 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 ELP1O95163 1332 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 ORC4O43929 436 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 NPM3O75607 178 aaKnown RBP26.38■■□□□ 1.81
CDX1-201ENST00000231656 PRDM1O75626 825 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 TTC6Q86TZ1 520 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 MICALL2Q8IY33 904 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 GPC2Q8N158 579 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 PANK2Q9BZ23 570 aa26.38■■□□□ 1.81
CDX1-201ENST00000231656 CNOT7Q9UIV1 285 aaKnown RBP26.38■■□□□ 1.81
CDX1-201ENST00000231656 C9orf131Q5VYM1 1079 aa26.37■■□□□ 1.81
CDX1-201ENST00000231656 RAB11FIP4Q86YS3 637 aa26.37■■□□□ 1.81
CDX1-201ENST00000231656 ESR2Q92731 530 aa26.37■■□□□ 1.81
CDX1-201ENST00000231656 LIFRP42702 1097 aa26.36■■□□□ 1.81
CDX1-201ENST00000231656 TCP10Q12799 353 aa26.36■■□□□ 1.81
CDX1-201ENST00000231656 TMEM67Q5HYA8 995 aa26.36■■□□□ 1.81
CDX1-201ENST00000231656 APOA5Q6Q788 366 aa26.36■■□□□ 1.81
CDX1-201ENST00000231656 ZFPM1Q8IX07 1006 aa26.36■■□□□ 1.81
CDX1-201ENST00000231656 ZNF70Q9UC06 446 aaPredicted RBP26.36■■□□□ 1.81
CDX1-201ENST00000231656 CLRN2A0PK11 232 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 SYCE3A1L190 88 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 WNT10BO00744 389 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 SPDYE2Q495Y8 402 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 TMOD2Q9NZR1 351 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 GRIN3BO60391 1043 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 RANBP6O60518 1105 aaKnown RBP26.35■■□□□ 1.81
CDX1-201ENST00000231656 PPFIA3O75145 1194 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 NBPF9Q3BBW0 867 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 LRSAM1Q6UWE0 723 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 C16orf86Q6ZW13 317 aa26.35■■□□□ 1.81
CDX1-201ENST00000231656 SCAND2PQ9GZW5 306 aaPredicted RBP26.35■■□□□ 1.81
CDX1-201ENST00000231656 EGFRP00533 1210 aa26.34■■□□□ 1.81
CDX1-201ENST00000231656 FOSBP53539 338 aa26.34■■□□□ 1.81
CDX1-201ENST00000231656 MTA3Q9BTC8 594 aa26.34■■□□□ 1.81
CDX1-201ENST00000231656 IFIT3O14879 490 aaKnown RBP26.33■■□□□ 1.81
CDX1-201ENST00000231656 ENTPD3O75355 529 aa26.33■■□□□ 1.81
CDX1-201ENST00000231656 METAP2P50579 478 aaKnown RBP eCLIP26.33■■□□□ 1.81
CDX1-201ENST00000231656 SLC44A5Q8NCS7 719 aa26.33■■□□□ 1.81
CDX1-201ENST00000231656 DHX36Q9H2U1 1008 aaKnown RBP26.33■■□□□ 1.81
CDX1-201ENST00000231656 CPLX1O14810 134 aa26.33■■□□□ 1.8
CDX1-201ENST00000231656 MYO1BO43795 1136 aa26.33■■□□□ 1.8
CDX1-201ENST00000231656 RBM26Q5T8P6 1007 aaKnown RBP26.33■■□□□ 1.8
CDX1-201ENST00000231656 SAMD7Q7Z3H4 446 aa26.33■■□□□ 1.8
CDX1-201ENST00000231656 LEO1Q8WVC0 666 aaPredicted RBP26.33■■□□□ 1.8
CDX1-201ENST00000231656 MKNK2Q9HBH9 465 aa26.33■■□□□ 1.8
CDX1-201ENST00000231656 TFIP11Q9UBB9 837 aaKnown RBP26.33■■□□□ 1.8
CDX1-201ENST00000231656 ORC3Q9UBD5 711 aaPredicted RBP26.33■■□□□ 1.8
CDX1-201ENST00000231656 NID2Q14112 1375 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 ZBTB43O43298 467 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 CDK8P49336 464 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 ZKSCAN3Q9BRR0 538 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 ZNF287Q9HBT7 754 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 GPRC5DQ9NZD1 345 aa26.32■■□□□ 1.8
CDX1-201ENST00000231656 DDTLA6NHG4 134 aaPredicted RBP26.31■■□□□ 1.8
CDX1-201ENST00000231656 TCP10L2B9ZVM9 353 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 ADD1P35611 737 aaKnown RBP26.31■■□□□ 1.8
CDX1-201ENST00000231656 GABPAQ06546 454 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 CCDC183Q5T5S1 534 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 NFXL1Q6ZNB6 911 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 SH3BP5LQ7L8J4 393 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 SIPA1L1O43166 1804 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 MYH8P13535 1937 aa26.31■■□□□ 1.8
CDX1-201ENST00000231656 H7C1D1 291 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms