RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SLURP2P0DP57 97 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 CAPN2P17655 700 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 ADORA1P30542 326 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 FAM110CQ1W6H9 321 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 SPTY2D1Q68D10 685 aaPredicted RBP9.69□□□□□ -0.86
CLK1-215ENST00000621181 CCDC84Q86UT8 332 aaPredicted RBP9.69□□□□□ -0.86
CLK1-215ENST00000621181 PAWRQ96IZ0 340 aaKnown RBP9.69□□□□□ -0.86
CLK1-215ENST00000621181 SMC4Q9NTJ3 1288 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 STAP2Q9UGK3 403 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 HDAC5Q9UQL6 1122 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 RFX7Q2KHR2 1363 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 PRKAR2AP13861 404 aaKnown RBP9.68□□□□□ -0.86
CLK1-215ENST00000621181 MAP3K10Q02779 954 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 NECAB2Q7Z6G3 386 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLK1-215ENST00000621181 PA2G4Q9UQ80 394 aaKnown RBP9.68□□□□□ -0.86
CLK1-215ENST00000621181 LAMA2P24043 3122 aaKnown RBP9.68□□□□□ -0.86
CLK1-215ENST00000621181 DLL1O00548 723 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 TIMM10P62072 90 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 ALDH1L2Q3SY69 923 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 TREML2Q5T2D2 321 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 PROCA1Q8NCQ7 364 aaPredicted RBP9.68□□□□□ -0.86
CLK1-215ENST00000621181 FAM163AQ96GL9 167 aaPredicted RBP9.68□□□□□ -0.86
CLK1-215ENST00000621181 LRCH3Q96II8 777 aa9.68□□□□□ -0.86
CLK1-215ENST00000621181 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLK1-215ENST00000621181 MROH7-TTC4A0A0A0MT08 1334 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 ZBED9Q6R2W3 1325 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 PHIPQ8WWQ0 1821 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 DNAH12Q6ZR08 3092 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 FAM196BA6NMK8 535 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 SOX1O00570 391 aaPredicted RBP9.67□□□□□ -0.86
CLK1-215ENST00000621181 HMGCRP04035 888 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 GCLCP48506 637 aaPredicted RBP9.67□□□□□ -0.86
CLK1-215ENST00000621181 MECOMQ03112 1051 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 SPP2Q13103 211 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 PABPC4Q13310 644 aaKnown RBP eCLIP9.67□□□□□ -0.86
CLK1-215ENST00000621181 ERICH6BQ5W0A0 696 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 ERICH6Q7L0X2 663 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 ZNF280CQ8ND82 737 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 DIS3LQ8TF46 1054 aaKnown RBP9.67□□□□□ -0.86
CLK1-215ENST00000621181 CRISPLD2Q9H0B8 497 aa9.67□□□□□ -0.86
CLK1-215ENST00000621181 OSBPL5Q9H0X9 879 aaPredicted RBP9.67□□□□□ -0.86
CLK1-215ENST00000621181 PDS5AQ29RF7 1337 aaKnown RBP9.67□□□□□ -0.86
CLK1-215ENST00000621181 GPR75-ASB3A0A0A6YYF3 556 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 A0A1B0GUL7 405 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 TBC1D12O60347 775 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 HMGCS2P54868 508 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 MVPQ14764 893 aaKnown RBP9.66□□□□□ -0.86
CLK1-215ENST00000621181 C7orf61Q8IZ16 206 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 HMX1Q9NP08 348 aaPredicted RBP9.66□□□□□ -0.86
CLK1-215ENST00000621181 COPRSQ9NQ92 184 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 AKAP2Q9Y2D5 859 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 UNC80Q8N2C7 3258 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 RHBDL3P58872 404 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 POTEHQ6S545 545 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 ANKLE1Q8NAG6 615 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 XAGE2Q96GT9 111 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 TBC1D2Q9BYX2 928 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 NBPF3Q9H094 633 aa9.66□□□□□ -0.86
CLK1-215ENST00000621181 ZMYND8Q9ULU4 1186 aaPredicted RBP9.66□□□□□ -0.86
CLK1-215ENST00000621181 RPTORQ8N122 1335 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 GSTO1P78417 241 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 SLFN5Q08AF3 891 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 GORABQ5T7V8 394 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 NEUROD6Q96NK8 337 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 ASCC2Q9H1I8 757 aaPredicted RBP9.65□□□□□ -0.86
CLK1-215ENST00000621181 NOB1Q9ULX3 412 aaKnown RBP9.65□□□□□ -0.86
CLK1-215ENST00000621181 ALPK3Q96L96 1907 aa9.65□□□□□ -0.86
CLK1-215ENST00000621181 USP17L5A8MUK1 530 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 SRGAP3O43295 1099 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 LDHCP07864 332 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 SYN1P17600 705 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 BMP8BP34820 402 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 CAP2P40123 477 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 IRX3P78415 501 aaPredicted RBP9.64□□□□□ -0.87
CLK1-215ENST00000621181 TFCP2Q12800 502 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 PI16Q6UXB8 463 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 MEIS3Q99687 375 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 GDF15Q99988 308 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 API5Q9BZZ5 524 aaKnown RBP9.64□□□□□ -0.87
CLK1-215ENST00000621181 AS3MTQ9HBK9 375 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 RAI14Q9P0K7 980 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 CUL9Q8IWT3 2517 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 LOC285556D6RIA3 1793 aa9.64□□□□□ -0.87
CLK1-215ENST00000621181 ATAD5Q96QE3 1844 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 TRIM32Q13049 653 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 MTMR2Q13614 643 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 TBC1D9Q6ZT07 1266 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 DEFB123Q8N688 67 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 SPATA5Q8NB90 893 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 ZNF384Q8TF68 577 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 NSUN4Q96CB9 384 aaKnown RBP9.63□□□□□ -0.87
CLK1-215ENST00000621181 NOL10Q9BSC4 688 aaKnown RBP9.63□□□□□ -0.87
CLK1-215ENST00000621181 C11orf49Q9H6J7 331 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 HERC5Q9UII4 1024 aaKnown RBP9.63□□□□□ -0.87
CLK1-215ENST00000621181 GJD2Q9UKL4 321 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 MAP4K4O95819 1239 aaPredicted RBP9.63□□□□□ -0.87
CLK1-215ENST00000621181 CYP2B6P20813 491 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 GPR153Q6NV75 609 aa9.63□□□□□ -0.87
CLK1-215ENST00000621181 CCAR1Q8IX12 1150 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms