RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MAP3K12Q12852 859 aa23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 GPAT2Q6NUI2 795 aa23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 NBPF11Q86T75 865 aa23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 FOXP4Q8IVH2 680 aaPredicted RBP23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 PTPRFP10586 1907 aa23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 PHIPQ8WWQ0 1821 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 CYP7A1P22680 504 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 CAP2P40123 477 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 TTF1Q15361 905 aaPredicted RBP23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 ADGRA1Q86SQ6 560 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 TGFBRAP1Q8WUH2 860 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 ADGRA2Q96PE1 1338 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 FOCADQ5VW36 1801 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 HTTP42858 3142 aa23.24■■□□□ 1.31
CCDC28A-203ENST00000617445 HOXD10P28358 340 aa23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 METTL16Q86W50 562 aaKnown RBP23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 SIRT2Q8IXJ6 389 aa23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 IL1RAPL2Q9NP60 686 aa23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 CPA4Q9UI42 421 aa23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 CDK5RAP2Q96SN8 1893 aa23.23■■□□□ 1.31
CCDC28A-203ENST00000617445 SLURP2P0DP57 97 aa23.22■■□□□ 1.31
CCDC28A-203ENST00000617445 GADL1Q6ZQY3 521 aa23.22■■□□□ 1.31
CCDC28A-203ENST00000617445 MAPKAPK5Q8IW41 473 aa23.22■■□□□ 1.31
CCDC28A-203ENST00000617445 GINM1Q9NU53 330 aa23.22■■□□□ 1.31
CCDC28A-203ENST00000617445 FLT1P17948 1338 aa23.22■■□□□ 1.31
CCDC28A-203ENST00000617445 TRIM75PA6NK02 468 aa23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 IFIT2P09913 472 aaKnown RBP23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 SLC9C1Q4G0N8 1177 aa23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 MAGEB6Q8N7X4 407 aa23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 PROCA1Q8NCQ7 364 aaPredicted RBP23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 PTCH2Q9Y6C5 1203 aa23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 TNRC18O15417 2968 aaPredicted RBP23.21■■□□□ 1.31
CCDC28A-203ENST00000617445 FAM196BA6NMK8 535 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 USP17L5A8MUK1 530 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 PSMC4P43686 418 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 ZNF280CQ8ND82 737 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 TRIM34Q9BYJ4 488 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 ARHGAP39Q9C0H5 1083 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 AS3MTQ9HBK9 375 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 AGTPBP1Q9UPW5 1226 aa23.2■■□□□ 1.3
CCDC28A-203ENST00000617445 ATAD5Q96QE3 1844 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 HLA-DOAP06340 250 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 ASNSP08243 561 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 BCRP11274 1271 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 CRACR2BQ8N4Y2 399 aaPredicted RBP23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 ZNF333Q96JL9 665 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 TMEM106CQ9BVX2 250 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 ANTXR1Q9H6X2 564 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 PNMA3Q9UL41 463 aa23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 RBBP6Q7Z6E9 1792 aaKnown RBP23.19■■□□□ 1.3
CCDC28A-203ENST00000617445 CYP2C8P10632 490 aa23.18■■□□□ 1.3
CCDC28A-203ENST00000617445 DYNLL1P63167 89 aaKnown RBP23.18■■□□□ 1.3
CCDC28A-203ENST00000617445 SPP2Q13103 211 aa23.18■■□□□ 1.3
CCDC28A-203ENST00000617445 SRRDQ9UH36 339 aa23.18■■□□□ 1.3
CCDC28A-203ENST00000617445 PALD1Q9ULE6 856 aa23.18■■□□□ 1.3
CCDC28A-203ENST00000617445 APBB1O00213 710 aa23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 FMNL1O95466 1100 aaPredicted RBP23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 PABPC4Q13310 644 aaKnown RBP eCLIP23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 TRIM47Q96LD4 638 aa23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 WDR18Q9BV38 432 aa23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 MYH1P12882 1939 aa23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 SIPA1L1O43166 1804 aa23.17■■□□□ 1.3
CCDC28A-203ENST00000617445 USP5P45974 858 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 FCGRTP55899 365 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 SH3D19Q5HYK7 790 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 MIGA1Q8NAN2 632 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 SMCR8Q8TEV9 937 aaPredicted RBP23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 NDUFB9Q9Y6M9 179 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 CENPFP49454 3210 aa23.16■■□□□ 1.3
CCDC28A-203ENST00000617445 RRP1BQ14684 758 aaKnown RBP23.15■■□□□ 1.3
CCDC28A-203ENST00000617445 TTC6Q86TZ1 520 aa23.15■■□□□ 1.3
CCDC28A-203ENST00000617445 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.15■■□□□ 1.3
CCDC28A-203ENST00000617445 MGAMO43451 1857 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 OSBPP22059 807 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 CTGFP29279 349 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 SLC9C2Q5TAH2 1124 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 C20orf194Q5TEA3 1177 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 CCDC84Q86UT8 332 aaPredicted RBP23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 EHD4Q9H223 541 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 DNAJC18Q9H819 358 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 SAP30BPQ9UHR5 308 aaKnown RBP23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 ZSWIM8A7E2V4 1837 aa23.14■■□□□ 1.29
CCDC28A-203ENST00000617445 POTEFA5A3E0 1075 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 C19orf81C9J6K1 198 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 ATP5JP18859 108 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 GCLCP48506 637 aaPredicted RBP23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 HMGCS2P54868 508 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 RAET1EQ8TD07 263 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 RIOK1Q9BRS2 568 aaKnown RBP23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 LOC285556D6RIA3 1793 aa23.13■■□□□ 1.29
CCDC28A-203ENST00000617445 MAGEB6P1A0A0J9YX57 407 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 GOLIM4O00461 696 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 PDE6AP16499 860 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 BACE1P56817 501 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 TREML2Q5T2D2 321 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 DNAJC2Q99543 621 aaKnown RBP23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 LRRCC1Q9C099 1032 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 SERPINB13Q9UIV8 391 aa23.12■■□□□ 1.29
CCDC28A-203ENST00000617445 MYPNQ86TC9 1320 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms