RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 SLC5A1P13866 664 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 ZEB1P37275 1124 aaPredicted RBP10.89□□□□□ -0.67
SMAD4-215ENST00000592911 CDC42EP5Q6NZY7 148 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 DEFB123Q8N688 67 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 KAZALD1Q96I82 304 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 LRCH3Q96II8 777 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 PAWRQ96IZ0 340 aaKnown RBP10.89□□□□□ -0.67
SMAD4-215ENST00000592911 PUS3Q9BZE2 481 aaKnown RBP10.89□□□□□ -0.67
SMAD4-215ENST00000592911 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.89□□□□□ -0.672e-6■■■■□ 19.8
SMAD4-215ENST00000592911 GNL3LQ9NVN8 582 aaKnown RBP10.89□□□□□ -0.67
SMAD4-215ENST00000592911 MTMR10Q9NXD2 777 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 GABRQQ9UN88 632 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 RFX7Q2KHR2 1363 aa10.89□□□□□ -0.67
SMAD4-215ENST00000592911 LDHBP07195 334 aaKnown RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 XRCC5P13010 732 aaKnown RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 TTC28Q96AY4 2481 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 FAM163AQ96GL9 167 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 SUCLG2Q96I99 432 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 HMX1Q9NP08 348 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 BMP2KQ9NSY1 1161 aaPredicted RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 FAM198AQ9UFP1 575 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 OGDHLQ9ULD0 1010 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 LRRFIP2Q9Y608 721 aaKnown RBP10.88□□□□□ -0.67
SMAD4-215ENST00000592911 ZHX2Q9Y6X8 837 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 NCOR1O75376 2440 aa10.88□□□□□ -0.67
SMAD4-215ENST00000592911 GAKO14976 1311 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 ATAD5Q96QE3 1844 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 STK25O00506 426 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 ELNP15502 786 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 TIE1P35590 1138 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 HS6ST3Q8IZP7 471 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 GTF3C2Q8WUA4 911 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-215ENST00000592911 SOCS4Q8WXH5 440 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 OSBPL5Q9H0X9 879 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-215ENST00000592911 BICC1Q9H694 974 aaKnown RBP10.87□□□□□ -0.67
SMAD4-215ENST00000592911 C11orf49Q9H6J7 331 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 DENND2AQ9ULE3 1009 aa10.87□□□□□ -0.67
SMAD4-215ENST00000592911 IQSEC3Q9UPP2 1182 aaPredicted RBP10.87□□□□□ -0.67
SMAD4-215ENST00000592911 PTPRCP08575 1304 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 EYA2O00167 538 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 CIAO1O76071 339 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 NBPF7P0C2Y1 421 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-215ENST00000592911 EXOSC9Q06265 439 aaKnown RBP10.86□□□□□ -0.67
SMAD4-215ENST00000592911 NFIAQ12857 509 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 LRRC24Q50LG9 513 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 MAP3K21Q5TCX8 1036 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 GINM1Q9NU53 330 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 USP40Q9NVE5 1235 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 HDAC5Q9UQL6 1122 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 PLXNB2O15031 1838 aa10.86□□□□□ -0.67
SMAD4-215ENST00000592911 TTLL13PA6NNM8 815 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 IGSF3O75054 1194 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 TCP10Q12799 353 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 SPTY2D1Q68D10 685 aaPredicted RBP10.85□□□□□ -0.67
SMAD4-215ENST00000592911 SLC4A10Q6U841 1118 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 GADL1Q6ZQY3 521 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 C7orf61Q8IZ16 206 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 ANKRD44Q8N8A2 993 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 MORF4L1Q9UBU8 362 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 GJD2Q9UKL4 321 aa10.85□□□□□ -0.67
SMAD4-215ENST00000592911 MAGEA10P43363 369 aaPredicted RBP10.84□□□□□ -0.67
SMAD4-215ENST00000592911 RGS3P49796 1198 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 SH3D19Q5HYK7 790 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 ANKRD13CQ8N6S4 541 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 UBE2OQ9C0C9 1292 aaKnown RBP10.84□□□□□ -0.67
SMAD4-215ENST00000592911 STK24Q9Y6E0 443 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 VCANP13611 3396 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 FRMPD3Q5JV73 1810 aa10.84□□□□□ -0.67
SMAD4-215ENST00000592911 MAST2Q6P0Q8 1798 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 POTEB2H3BUK9 544 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 COL6A1P12109 1028 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 PRDX5P30044 214 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 DIXDC1Q155Q3 683 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.83□□□□□ -0.68
SMAD4-215ENST00000592911 ZNF280CQ8ND82 737 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 AS3MTQ9HBK9 375 aa10.83□□□□□ -0.68
SMAD4-215ENST00000592911 TRIM75PA6NK02 468 aa10.82□□□□□ -0.68
SMAD4-215ENST00000592911 ATMINO43313 823 aaPredicted RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 MSCO60682 206 aa10.82□□□□□ -0.68
SMAD4-215ENST00000592911 MAPK4P31152 587 aa10.82□□□□□ -0.68
SMAD4-215ENST00000592911 HOXA7P31268 230 aaPredicted RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 ZSCAN29Q8IWY8 852 aaPredicted RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 DIS3LQ8TF46 1054 aaKnown RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 NUDT12Q9BQG2 462 aa10.82□□□□□ -0.68
SMAD4-215ENST00000592911 COL25A1Q9BXS0 654 aaPredicted RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 HERC5Q9UII4 1024 aaKnown RBP10.82□□□□□ -0.68
SMAD4-215ENST00000592911 GPR75-ASB3A0A0A6YYF3 556 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 IL15P40933 162 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 RFX5P48382 616 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 ATN1P54259 1190 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 ATP2B3Q16720 1220 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 ASTLQ6HA08 431 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 DZIP1Q86YF9 867 aaKnown RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 WDR18Q9BV38 432 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 CEP126Q9P2H0 1117 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 ZMYND8Q9ULU4 1186 aaPredicted RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 LAMA2P24043 3122 aaKnown RBP10.81□□□□□ -0.68
SMAD4-215ENST00000592911 MROH7-TTC4A0A0A0MT08 1334 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 PFASO15067 1338 aa10.81□□□□□ -0.68
SMAD4-215ENST00000592911 FOCADQ5VW36 1801 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms