RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DCP1AQ9NPI6 582 aaPredicted RBP11.16□□□□□ -0.62
VPS35-206ENST00000565228 DOCK1Q14185 1865 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 A0A0D9SFI3 127 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 GSG1L2A8MUP6 293 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 IGSF3O75054 1194 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 BAG3O95817 575 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 MAP3K9P80192 1104 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 MOGSQ13724 837 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 SPRYD7Q5W111 196 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 ARMC9Q7Z3E5 817 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 NKX2-3Q8TAU0 364 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 WNK4Q96J92 1243 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 MS4A4AQ96JQ5 239 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 WRNIP1Q96S55 665 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 PTPN18Q99952 460 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 R3HDMLQ9H3Y0 253 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 WBP1LQ9NX94 342 aa11.15□□□□□ -0.62
VPS35-206ENST00000565228 ERC2O15083 957 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 FOXN1O15353 648 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 GABPAQ06546 454 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 VPS53Q5VIR6 699 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 ZNF589Q86UQ0 364 aaPredicted RBP11.14□□□□□ -0.63
VPS35-206ENST00000565228 ANKRD13AQ8IZ07 590 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 SLC44A5Q8NCS7 719 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 APPBP2Q92624 585 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 DYNLL2Q96FJ2 89 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 GPATCH3Q96I76 525 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 ZNF341Q9BYN7 854 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 TSKSQ9UJT2 592 aa11.14□□□□□ -0.63
VPS35-206ENST00000565228 GPAA1O43292 621 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 PPP1R12BO60237 982 aaPredicted RBP11.13□□□□□ -0.63
VPS35-206ENST00000565228 TBC1D12O60347 775 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 NF2P35240 595 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 USP5P45974 858 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 IREB2P48200 963 aaKnown RBP11.13□□□□□ -0.63
VPS35-206ENST00000565228 NMIQ13287 307 aaPredicted RBP11.13□□□□□ -0.63
VPS35-206ENST00000565228 DGKZQ13574 1117 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 NOL9Q5SY16 702 aaKnown RBP11.13□□□□□ -0.63
VPS35-206ENST00000565228 TTC22Q5TAA0 569 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 ZSCAN29Q8IWY8 852 aaPredicted RBP11.13□□□□□ -0.63
VPS35-206ENST00000565228 EVI5LQ96CN4 794 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 OPTNQ96CV9 577 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 FSD1Q9BTV5 496 aa11.13□□□□□ -0.63
VPS35-206ENST00000565228 IGF2BP3O00425 579 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS35-206ENST00000565228 IRF6O14896 467 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 PLCG2P16885 1265 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 SDSP20132 328 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 GUCY1A2P33402 732 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 SHMT1P34896 483 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 ECE1P42892 770 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 CAP1Q01518 475 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 CTR9Q6PD62 1173 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 CCDC102AQ96A19 550 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 SLC10A4Q96EP9 437 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS35-206ENST00000565228 SLC4A4Q9Y6R1 1079 aa11.12□□□□□ -0.63
VPS35-206ENST00000565228 CASP8AP2Q9UKL3 1982 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 SPDYE5A6NIY4 337 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 USP17L12C9JPN9 530 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 USP17L21D6R901 530 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 GDF11O95390 407 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 PTPRAP18433 802 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 MAP2K2P36507 400 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 NOGQ13253 232 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 TATDN1Q6P1N9 297 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 TMED8Q6PL24 325 aaPredicted RBP11.11□□□□□ -0.63
VPS35-206ENST00000565228 CENPQQ7L2Z9 268 aaPredicted RBP11.11□□□□□ -0.63
VPS35-206ENST00000565228 BRI3BPQ8WY22 251 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 RILPL2Q969X0 211 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 OTUD5Q96G74 571 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 NOL10Q9BSC4 688 aaKnown RBP11.11□□□□□ -0.63
VPS35-206ENST00000565228 CRNKL1Q9BZJ0 848 aaKnown RBP11.11□□□□□ -0.63
VPS35-206ENST00000565228 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS35-206ENST00000565228 INCENPQ9NQS7 918 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 RNF186Q9NXI6 227 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 MCM9Q9NXL9 1143 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 PI4KBQ9UBF8 816 aa11.11□□□□□ -0.63
VPS35-206ENST00000565228 GREB1LQ9C091 1923 aaPredicted RBP11.11□□□□□ -0.63
VPS35-206ENST00000565228 TESPA1A2RU30 521 aaPredicted RBP11.1□□□□□ -0.63
VPS35-206ENST00000565228 TRIM6-TRIM34B2RNG4 842 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 HSPA8P11142 646 aaKnown RBP11.1□□□□□ -0.63
VPS35-206ENST00000565228 CAP2P40123 477 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 TM4SF4P48230 202 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 C12orf60Q5U649 245 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 DCAF15Q66K64 600 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 CLEC10AQ8IUN9 316 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 SCYL3Q8IZE3 742 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 FAM43AQ8N2R8 423 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 AIDAQ96BJ3 306 aa11.1□□□□□ -0.63
VPS35-206ENST00000565228 DHX36Q9H2U1 1008 aaKnown RBP11.1□□□□□ -0.63
VPS35-206ENST00000565228 ZSWIM8A7E2V4 1837 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 MYH8P13535 1937 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 UNCXA6NJT0 531 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 CENPBP07199 599 aaPredicted RBP11.09□□□□□ -0.63
VPS35-206ENST00000565228 ZFYP08048 801 aaPredicted RBP11.09□□□□□ -0.63
VPS35-206ENST00000565228 ZSCAN25Q6NSZ9 544 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 SIAH1Q8IUQ4 282 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 FOXP4Q8IVH2 680 aaPredicted RBP11.09□□□□□ -0.63
VPS35-206ENST00000565228 IFNL3Q8IZI9 196 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms