RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SGSM3Q96HU1 749 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 WDR24Q96S15 920 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 FBXO3Q9UK99 471 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 C4BP0C0L5 1744 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 SH3TC1Q8TE82 1336 aa15.21■□□□□ 0.03
CLK3-206ENST00000562078 CAMTA2O94983 1202 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 ADORA1P30542 326 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 HNRNPH1P31943 449 aaKnown RBP15.21■□□□□ 0.02
CLK3-206ENST00000562078 MAP3K9P80192 1104 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 FBXW10Q5XX13 1052 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 BLOC1S2Q6QNY1 142 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 HMG20BQ9P0W2 317 aa15.21■□□□□ 0.02
CLK3-206ENST00000562078 ERLIN2O94905 339 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 TXLNAP40222 546 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 RPAINQ86UA6 219 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 CEP120Q8N960 986 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 GREM2Q9H772 168 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 TRMT112Q9UI30 125 aaKnown RBP15.2■□□□□ 0.02
CLK3-206ENST00000562078 MRFAP1Q9Y605 127 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 UBN2Q6ZU65 1347 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 NRDCO43847 1150 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 CTSWP56202 376 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 BEND6Q5SZJ8 279 aaPredicted RBP15.2■□□□□ 0.02
CLK3-206ENST00000562078 RC3H1Q5TC82 1133 aaKnown RBP15.2■□□□□ 0.02
CLK3-206ENST00000562078 USPL1Q5W0Q7 1092 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 CEP57L1Q8IYX8 460 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 UTP14AQ9BVJ6 771 aaKnown RBP15.2■□□□□ 0.02
CLK3-206ENST00000562078 ANO10Q9NW15 660 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 ZNF652Q9Y2D9 606 aa15.2■□□□□ 0.02
CLK3-206ENST00000562078 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
CLK3-206ENST00000562078 VWA3AA6NCI4 1184 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 IRS4O14654 1257 aaPredicted RBP15.19■□□□□ 0.02
CLK3-206ENST00000562078 PPFIA4O75335 1185 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 ITGA6P23229 1130 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 LRCH2Q5VUJ6 765 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 SMIM5Q71RC9 77 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 TTLL11Q8NHH1 800 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 GOLGA1Q92805 767 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 GOLPH3LQ9H4A5 285 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 SCN7AQ01118 1682 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 CASZ1Q86V15 1759 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 RPS6KB1P23443 525 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 GOLGA8FQ08AF8 430 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 GOLGA8DPQ0D2H9 430 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 HDXQ7Z353 690 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 ZNF34Q8IZ26 560 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 DDX11Q96FC9 970 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 XAGE2Q96GT9 111 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 TAOK2Q9UL54 1235 aa15.19■□□□□ 0.02
CLK3-206ENST00000562078 RTCBQ9Y3I0 505 aaKnown RBP15.19■□□□□ 0.02
CLK3-206ENST00000562078 LAMB2P55268 1798 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 CCP110O43303 1012 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 RPS6KA4O75676 772 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 PDCP20941 246 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 BRD3Q15059 726 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 TTC39AQ5SRH9 613 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 CLIC6Q96NY7 704 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
CLK3-206ENST00000562078 ARAP2Q8WZ64 1704 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 GNG11P61952 73 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 FKBP4Q02790 459 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLK3-206ENST00000562078 METTL24Q5JXM2 366 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 CCAR1Q8IX12 1150 aaKnown RBP15.18■□□□□ 0.02
CLK3-206ENST00000562078 CCDC102AQ96A19 550 aa15.18■□□□□ 0.02
CLK3-206ENST00000562078 RGS17Q9UGC6 210 aaPredicted RBP15.18■□□□□ 0.02
CLK3-206ENST00000562078 NIP7Q9Y221 180 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLK3-206ENST00000562078 LRP5O75197 1615 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 IRF6O14896 467 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 LDHAL6AQ6ZMR3 332 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 DHX58Q96C10 678 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 FAM204AQ9H8W3 233 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 CYP21A2P08686 494 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 GRIPAP1Q4V328 841 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 ZMYM1Q5SVZ6 1142 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 JAKMIP3Q5VZ66 844 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 POTEAQ6S8J7 498 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 MPHOSPH8Q99549 860 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 LRRC4BQ9NT99 713 aa15.17■□□□□ 0.02
CLK3-206ENST00000562078 MAST3O60307 1309 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 C4AP0C0L4 1744 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 ANKRD18BA2A2Z9 1011 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 CTAGE5O15320 804 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 EIF3JO75822 258 aaKnown RBP15.16■□□□□ 0.02
CLK3-206ENST00000562078 TOB2Q14106 344 aaPredicted RBP15.16■□□□□ 0.02
CLK3-206ENST00000562078 SCARF1Q14162 830 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 KRT32Q14532 448 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 PNKPQ96T60 521 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 JPH2Q9BR39 696 aaPredicted RBP15.16■□□□□ 0.02
CLK3-206ENST00000562078 FTOQ9C0B1 505 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLK3-206ENST00000562078 ANKZF1Q9H8Y5 726 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 CNNM1Q9NRU3 951 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 HELLSQ9NRZ9 838 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 RAI14Q9P0K7 980 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 PPP1R12AO14974 1030 aaPredicted RBP15.16■□□□□ 0.02
CLK3-206ENST00000562078 ZPR1O75312 459 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 PTPN21Q16825 1174 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 MAP9Q49MG5 647 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLK3-206ENST00000562078 ABCB6Q9NP58 842 aa15.16■□□□□ 0.02
CLK3-206ENST00000562078 RIPOR2Q9Y4F9 1068 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms