RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PLEKHG3A1L390 1219 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 NOP2P46087 812 aaKnown RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 NAA15Q9BXJ9 866 aaKnown RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 MKNK2Q9HBH9 465 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 VAT1LQ9HCJ6 419 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 A0A1B0GUA9 196 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 A0A1W2PQ27 194 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 A0A1W2PQ64 194 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 A0A1W2PQD8 194 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 CCDC160A6NGH7 325 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 LRRC24Q50LG9 513 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 ARMCX5Q6P1M9 558 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 PPM1EQ8WY54 764 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 CCDC42Q96M95 316 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 UBA5Q9GZZ9 404 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 TSPY2A6NKD2 308 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 GCP02774 474 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 UQCRFS1P1P0C7P4 283 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 RNASE9P60153 205 aaKnown RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 ASIC1P78348 528 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 RBL2Q08999 1139 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 RILPL1Q5EBL4 403 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 WWC2Q6AWC2 1192 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 CABLES1Q8TDN4 633 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 APPBP2Q92624 585 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 FAM89AQ96GI7 184 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 TCP11L1Q9NUJ3 509 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 SEC63Q9UGP8 760 aaKnown RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 PSMA7O14818 248 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 KCNA6P17658 529 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 CCZ1BP86790 482 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 CCZ1P86791 482 aaPredicted RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 PRPF4BQ13523 1007 aaKnown RBP8.01□□□□□ -1.13
USP3-210ENST00000559192 HEATR3Q7Z4Q2 680 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 PLBD2Q8NHP8 589 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 ESR2Q92731 530 aa8.01□□□□□ -1.13
USP3-210ENST00000559192 HECW2Q9P2P5 1572 aa8□□□□□ -1.13
USP3-210ENST00000559192 GOLGA6BA6NDN3 693 aa8□□□□□ -1.13
USP3-210ENST00000559192 ERCC3P19447 782 aa8□□□□□ -1.13
USP3-210ENST00000559192 BRD2P25440 801 aaKnown RBP8□□□□□ -1.13
USP3-210ENST00000559192 TUBB4BP68371 445 aa8□□□□□ -1.13
USP3-210ENST00000559192 PIK3AP1Q6ZUJ8 805 aa8□□□□□ -1.13
USP3-210ENST00000559192 SCLT1Q96NL6 688 aa8□□□□□ -1.13
USP3-210ENST00000559192 AIFM3Q96NN9 605 aa8□□□□□ -1.13
USP3-210ENST00000559192 KAT14Q9H8E8 782 aa8□□□□□ -1.13
USP3-210ENST00000559192 FAM204AQ9H8W3 233 aa8□□□□□ -1.13
USP3-210ENST00000559192 BMP2KQ9NSY1 1161 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 SWAP70Q9UH65 585 aa8□□□□□ -1.13
USP3-210ENST00000559192 TCEAL9Q9UHQ7 104 aa8□□□□□ -1.13
USP3-210ENST00000559192 ANKRD65E5RJM6 399 aa8□□□□□ -1.13
USP3-210ENST00000559192 ENC1O14682 589 aa8□□□□□ -1.13
USP3-210ENST00000559192 ZMYND10O75800 440 aa8□□□□□ -1.13
USP3-210ENST00000559192 HPDP32754 393 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 KRT9P35527 623 aa8□□□□□ -1.13
USP3-210ENST00000559192 PAK1Q13153 545 aa8□□□□□ -1.13
USP3-210ENST00000559192 CAVIN4Q5BKX8 364 aa8□□□□□ -1.13
USP3-210ENST00000559192 VSTM4Q8IW00 320 aa8□□□□□ -1.13
USP3-210ENST00000559192 SLC35F6Q8N357 371 aa8□□□□□ -1.13
USP3-210ENST00000559192 NELFBQ8WX92 580 aa8□□□□□ -1.13
USP3-210ENST00000559192 PYM1Q9BRP8 204 aaKnown RBP8□□□□□ -1.13
USP3-210ENST00000559192 TMX4Q9H1E5 349 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 SLC52A2Q9HAB3 445 aa8□□□□□ -1.13
USP3-210ENST00000559192 PCDHA5Q9Y5H7 936 aa8□□□□□ -1.13
USP3-210ENST00000559192 USP6P35125 1406 aa8□□□□□ -1.13
USP3-210ENST00000559192 ZMYM6O95789 1325 aa8□□□□□ -1.13
USP3-210ENST00000559192 GIGYF2Q6Y7W6 1299 aaKnown RBP8□□□□□ -1.13
USP3-210ENST00000559192 SMYD4Q8IYR2 804 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 RABGGTAQ92696 567 aa8□□□□□ -1.13
USP3-210ENST00000559192 CALML4Q96GE6 196 aa8□□□□□ -1.13
USP3-210ENST00000559192 WWC3Q9ULE0 1092 aa8□□□□□ -1.13
USP3-210ENST00000559192 ADGRB2O60241 1585 aa8□□□□□ -1.13
USP3-210ENST00000559192 FGAP02671 866 aa8□□□□□ -1.13
USP3-210ENST00000559192 CASP14P31944 242 aa8□□□□□ -1.13
USP3-210ENST00000559192 RAD51AP2Q09MP3 1159 aa8□□□□□ -1.13
USP3-210ENST00000559192 SRGAP1Q7Z6B7 1085 aa8□□□□□ -1.13
USP3-210ENST00000559192 TMTC1Q8IUR5 882 aa8□□□□□ -1.13
USP3-210ENST00000559192 FBXO18Q8NFZ0 1043 aa8□□□□□ -1.13
USP3-210ENST00000559192 ZNF496Q96IT1 587 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 RSRC1Q96IZ7 334 aaKnown RBP8□□□□□ -1.13
USP3-210ENST00000559192 CCDC43Q96MW1 224 aaKnown RBP8□□□□□ -1.13
USP3-210ENST00000559192 POLR3EQ9NVU0 708 aa8□□□□□ -1.13
USP3-210ENST00000559192 TAF6LQ9Y6J9 622 aa8□□□□□ -1.13
USP3-210ENST00000559192 ROBO2Q9HCK4 1378 aa8□□□□□ -1.13
USP3-210ENST00000559192 ALKQ9UM73 1620 aa8□□□□□ -1.13
USP3-210ENST00000559192 COL3A1P02461 1466 aaPredicted RBP8□□□□□ -1.13
USP3-210ENST00000559192 DEXIO95424 95 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 BMP15O95972 392 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 CHGBP05060 677 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 IQUBQ8NA54 791 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 ACRBPQ8NEB7 543 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 MAST3O60307 1309 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 CRB1P82279 1406 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 STX10O60499 249 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 INPP5BP32019 993 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 SND1Q7KZF4 910 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP3-210ENST00000559192 TMEM87BQ96K49 555 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 CFAP57Q96MR6 1250 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 SAMSN1Q9NSI8 373 aaKnown RBP7.99□□□□□ -1.13
USP3-210ENST00000559192 VPS54Q9P1Q0 977 aa7.99□□□□□ -1.13
USP3-210ENST00000559192 RTL9Q8NET4 1388 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms