RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 HDAC1Q13547 482 aaPredicted RBP8.09□□□□□ -1.11
VPS29-210ENST00000552130 MSMPQ1L6U9 139 aa8.09□□□□□ -1.11
VPS29-210ENST00000552130 ARSHQ5FYA8 562 aa8.09□□□□□ -1.11
VPS29-210ENST00000552130 NFXL1Q6ZNB6 911 aa8.09□□□□□ -1.11
VPS29-210ENST00000552130 HOMER2Q9NSB8 354 aa8.09□□□□□ -1.11
VPS29-210ENST00000552130 PIM2Q9P1W9 311 aa8.09□□□□□ -1.11
VPS29-210ENST00000552130 WDR64B1ANS9 1081 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 SART1O43290 800 aaKnown RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 GNA15P30679 374 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 PTPN12Q05209 780 aaKnown RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 PDE12Q6L8Q7 609 aaKnown RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 CBLL1Q75N03 491 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 WDR75Q8IWA0 830 aaKnown RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 ABI1Q8IZP0 508 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 GPR152Q8TDT2 470 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 MPHOSPH6Q99547 160 aaKnown RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 KCNF1Q9H3M0 494 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 TMEM63CQ9P1W3 806 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 STIM2Q9P246 746 aa8.08□□□□□ -1.12
VPS29-210ENST00000552130 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.08□□□□□ -1.12
VPS29-210ENST00000552130 CTSHP09668 335 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 MPSTP25325 297 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 LMOD3Q0VAK6 560 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 PAK2Q13177 524 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 NAA30Q147X3 362 aaPredicted RBP8.07□□□□□ -1.12
VPS29-210ENST00000552130 ALG1LQ6GMV1 187 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 HS2ST1Q7LGA3 356 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 NCAPG2Q86XI2 1143 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 TSR2Q969E8 191 aaKnown RBP8.07□□□□□ -1.12
VPS29-210ENST00000552130 GPRASP2Q96D09 838 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 APBA2Q99767 749 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 TMX4Q9H1E5 349 aaPredicted RBP8.07□□□□□ -1.12
VPS29-210ENST00000552130 ELP3Q9H9T3 547 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 SNTG2Q9NY99 539 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 CNTN3Q9P232 1028 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 SOX13Q9UN79 622 aa8.07□□□□□ -1.12
VPS29-210ENST00000552130 CAND2O75155 1236 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 IGHA2P01877 340 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 PRNPP04156 253 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 CPSF6Q16630 551 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS29-210ENST00000552130 XKR5Q6UX68 686 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 PCGF5Q86SE9 256 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 SH3TC2Q8TF17 1288 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 APPBP2Q92624 585 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 MFSD14AQ96MC6 490 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 DEPDC7Q96QD5 511 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 RUSC1Q9BVN2 902 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 DZANK1Q9NVP4 752 aa8.06□□□□□ -1.12
VPS29-210ENST00000552130 GPR182O15218 404 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 F13BP05160 661 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 HSP90AA1P07900 732 aaKnown RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 MAP4P27816 1152 aaKnown RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 POU5F1BQ06416 359 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 ZRSR2Q15696 482 aaKnown RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 KIAA0907Q7Z7F0 614 aaPredicted RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 RAVER1Q8IY67 606 aaKnown RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 SAMD3Q8N6K7 520 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 ABTB2Q8N961 1025 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 ZNF512BQ96KM6 892 aaPredicted RBP8.05□□□□□ -1.12
VPS29-210ENST00000552130 TMPRSS13Q9BYE2 586 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 TRIM55Q9BYV6 548 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 GGT7Q9UJ14 662 aa8.05□□□□□ -1.12
VPS29-210ENST00000552130 PNMA6FA0A0J9YX94 578 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 IFRD1O00458 451 aaPredicted RBP8.04□□□□□ -1.12
VPS29-210ENST00000552130 ZNF500O60304 480 aaPredicted RBP8.04□□□□□ -1.12
VPS29-210ENST00000552130 TIAF1O95411 115 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 SSBP05455 408 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS29-210ENST00000552130 KRT18P05783 430 aaKnown RBP8.04□□□□□ -1.12
VPS29-210ENST00000552130 HCLS1P14317 486 aaPredicted RBP8.04□□□□□ -1.12
VPS29-210ENST00000552130 ACPPP15309 386 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 FOSL1P15407 271 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 CD53P19397 219 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 MASP1P48740 699 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 CABP4P57796 275 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 NLRP12P59046 1061 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 JAG1P78504 1218 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 MYBPC2Q14324 1141 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 VPS72Q15906 364 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 SGO2Q562F6 1265 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 HGSNATQ68CP4 663 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 ZNF280DQ6N043 979 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 ALKBH8Q96BT7 664 aaKnown RBP8.04□□□□□ -1.12
VPS29-210ENST00000552130 SLC39A13Q96H72 371 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 FAM129BQ96TA1 746 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 ZNF408Q9H9D4 720 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 SUGCTQ9HAC7 445 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 KANSL3Q9P2N6 904 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 CCDC39Q9UFE4 941 aa8.04□□□□□ -1.12
VPS29-210ENST00000552130 FAM177BA6PVY3 158 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 EXOSC10Q01780 885 aaKnown RBP8.03□□□□□ -1.12
VPS29-210ENST00000552130 RASA3Q14644 834 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 BRD3Q15059 726 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 FDX2Q6P4F2 183 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 HOMER1Q86YM7 354 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 SMG8Q8ND04 991 aaKnown RBP8.03□□□□□ -1.12
VPS29-210ENST00000552130 KRTAP4-9Q9BYQ8 210 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 KANSL2Q9H9L4 492 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 CCDC87Q9NVE4 849 aa8.03□□□□□ -1.12
VPS29-210ENST00000552130 MAP3K20Q9NYL2 800 aaKnown RBP8.03□□□□□ -1.12
VPS29-210ENST00000552130 AK5Q9Y6K8 562 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms