RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZMYND8Q9ULU4 1186 aaPredicted RBP20.94■□□□□ 0.94
VPS29-204ENST00000548259 MGAMO43451 1857 aa20.94■□□□□ 0.94
VPS29-204ENST00000548259 A0A0C4DFX4 3053 aa20.93■□□□□ 0.94
VPS29-204ENST00000548259 GPR75-ASB3A0A0A6YYF3 556 aa20.93■□□□□ 0.94
VPS29-204ENST00000548259 USP17L5A8MUK1 530 aa20.93■□□□□ 0.94
VPS29-204ENST00000548259 LRIT3Q3SXY7 679 aa20.93■□□□□ 0.94
VPS29-204ENST00000548259 SMC4Q9NTJ3 1288 aa20.93■□□□□ 0.94
VPS29-204ENST00000548259 DOCK2Q92608 1830 aa20.92■□□□□ 0.94
VPS29-204ENST00000548259 ADORA1P30542 326 aa20.92■□□□□ 0.94
VPS29-204ENST00000548259 HMGCS2P54868 508 aa20.92■□□□□ 0.94
VPS29-204ENST00000548259 IRX3P78415 501 aaPredicted RBP20.92■□□□□ 0.94
VPS29-204ENST00000548259 CCDC84Q86UT8 332 aaPredicted RBP20.92■□□□□ 0.94
VPS29-204ENST00000548259 TRMT44Q8IYL2 757 aaKnown RBP20.92■□□□□ 0.94
VPS29-204ENST00000548259 NOL10Q9BSC4 688 aaKnown RBP20.92■□□□□ 0.94
VPS29-204ENST00000548259 ASCC2Q9H1I8 757 aaPredicted RBP20.92■□□□□ 0.94
VPS29-204ENST00000548259 COPRSQ9NQ92 184 aa20.92■□□□□ 0.94
VPS29-204ENST00000548259 ZNF521Q96K83 1311 aa20.92■□□□□ 0.94
VPS29-204ENST00000548259 MECOMQ03112 1051 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 GORABQ5T7V8 394 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 CCAR1Q8IX12 1150 aaKnown RBP20.91■□□□□ 0.94
VPS29-204ENST00000548259 TDHQ8IZJ6 230 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 SOCS4Q8WXH5 440 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 TMOD4Q9NZQ9 345 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.91■□□□□ 0.94
VPS29-204ENST00000548259 HERC5Q9UII4 1024 aaKnown RBP20.91■□□□□ 0.94
VPS29-204ENST00000548259 LAMA3Q16787 3333 aa20.91■□□□□ 0.94
VPS29-204ENST00000548259 CAP2P40123 477 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 TIMM10P62072 90 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 PDE3AQ14432 1141 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 NUDT12Q9BQG2 462 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 UBE2OQ9C0C9 1292 aaKnown RBP20.9■□□□□ 0.94
VPS29-204ENST00000548259 MORF4L1Q9UBU8 362 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 GJD2Q9UKL4 321 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 OGDHLQ9ULD0 1010 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 PA2G4Q9UQ80 394 aaKnown RBP20.9■□□□□ 0.94
VPS29-204ENST00000548259 STXBP5LQ9Y2K9 1186 aa20.9■□□□□ 0.94
VPS29-204ENST00000548259 A0A1B0GUL7 405 aa20.89■□□□□ 0.93
VPS29-204ENST00000548259 MAGEA10P43363 369 aaPredicted RBP20.89■□□□□ 0.93
VPS29-204ENST00000548259 RHBDL3P58872 404 aa20.89■□□□□ 0.93
VPS29-204ENST00000548259 SH3D19Q5HYK7 790 aa20.89■□□□□ 0.93
VPS29-204ENST00000548259 API5Q9BZZ5 524 aaKnown RBP20.89■□□□□ 0.93
VPS29-204ENST00000548259 CUL9Q8IWT3 2517 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 COL2A1P02458 1487 aaPredicted RBP20.88■□□□□ 0.93
VPS29-204ENST00000548259 DOCK1Q14185 1865 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 FAM196BA6NMK8 535 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 SLURP2P0DP57 97 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 XRCC5P13010 732 aaKnown RBP20.88■□□□□ 0.93
VPS29-204ENST00000548259 SYN1P17600 705 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 GPRC5AQ8NFJ5 357 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 XAGE2Q96GT9 111 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 TRIM34Q9BYJ4 488 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 RAI14Q9P0K7 980 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 COL6A3P12111 3177 aa20.88■□□□□ 0.93
VPS29-204ENST00000548259 ASNSP08243 561 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 PRKAR2AP13861 404 aaKnown RBP20.87■□□□□ 0.93
VPS29-204ENST00000548259 CYP2B6P20813 491 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 MAPK4P31152 587 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 TEX11Q8IYF3 940 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 GTF3C2Q8WUA4 911 aaPredicted RBP20.87■□□□□ 0.93
VPS29-204ENST00000548259 NEUROD6Q96NK8 337 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 DHX36Q9H2U1 1008 aaKnown RBP20.87■□□□□ 0.93
VPS29-204ENST00000548259 PI4KBQ9UBF8 816 aa20.87■□□□□ 0.93
VPS29-204ENST00000548259 MYH2Q9UKX2 1941 aa20.86■□□□□ 0.93
VPS29-204ENST00000548259 ZKSCAN1P17029 563 aaPredicted RBP20.86■□□□□ 0.93
VPS29-204ENST00000548259 SPATA5Q8NB90 893 aa20.86■□□□□ 0.93
VPS29-204ENST00000548259 TRIB2Q92519 343 aa20.86■□□□□ 0.93
VPS29-204ENST00000548259 WDR18Q9BV38 432 aa20.86■□□□□ 0.93
VPS29-204ENST00000548259 CWC22Q9HCG8 908 aaKnown RBP20.86■□□□□ 0.93
VPS29-204ENST00000548259 C19orf81C9J6K1 198 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 BAG3O95817 575 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 PLCG2P16885 1265 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 HOXA7P31268 230 aaPredicted RBP20.85■□□□□ 0.93
VPS29-204ENST00000548259 BACE1P56817 501 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 TRIM32Q13049 653 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 MAP3K21Q5TCX8 1036 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 NSUN4Q96CB9 384 aaKnown RBP20.85■□□□□ 0.93
VPS29-204ENST00000548259 GINM1Q9NU53 330 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 LRP2BPQ9P2M1 347 aa20.85■□□□□ 0.93
VPS29-204ENST00000548259 SRGAP3O43295 1099 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 GNAI3P08754 354 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 CT47B1P0C2W7 299 aaPredicted RBP20.84■□□□□ 0.93
VPS29-204ENST00000548259 SLFN5Q08AF3 891 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 TFCP2Q12800 502 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 MTMR2Q13614 643 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 MTMR10Q9NXD2 777 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 HMG20BQ9P0W2 317 aa20.84■□□□□ 0.93
VPS29-204ENST00000548259 RGS2P41220 211 aa20.83■□□□□ 0.93
VPS29-204ENST00000548259 HERVK_113P62684 666 aa20.83■□□□□ 0.93
VPS29-204ENST00000548259 Q7L0L9 218 aa20.83■□□□□ 0.93
VPS29-204ENST00000548259 CRACR2BQ8N4Y2 399 aaPredicted RBP20.83■□□□□ 0.93
VPS29-204ENST00000548259 NOB1Q9ULX3 412 aaKnown RBP20.83■□□□□ 0.93
VPS29-204ENST00000548259 PTPRFP10586 1907 aa20.82■□□□□ 0.92
VPS29-204ENST00000548259 USP17L10C9JJH3 530 aa20.82■□□□□ 0.92
VPS29-204ENST00000548259 GLRX3O76003 335 aaKnown RBP20.82■□□□□ 0.92
VPS29-204ENST00000548259 UQCRFS1P1P0C7P4 283 aa20.82■□□□□ 0.92
VPS29-204ENST00000548259 P2RX7Q99572 595 aaKnown RBP20.82■□□□□ 0.92
VPS29-204ENST00000548259 ATF7IPQ6VMQ6 1270 aa20.81■□□□□ 0.92
VPS29-204ENST00000548259 FOXP4Q8IVH2 680 aaPredicted RBP20.81■□□□□ 0.92
VPS29-204ENST00000548259 LBHD1Q9BQE6 289 aaPredicted RBP20.81■□□□□ 0.92
VPS29-204ENST00000548259 TBC1D9Q6ZT07 1266 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms