RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LARP6Q9BRS8 491 aaKnown RBP10.45□□□□□ -0.74
USP28-215ENST00000545608 ZHX2Q9Y6X8 837 aa10.45□□□□□ -0.74
USP28-215ENST00000545608 KIAA0100Q14667 2235 aaKnown RBP10.45□□□□□ -0.74
USP28-215ENST00000545608 CYP2C8P10632 490 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 ARID4AP29374 1257 aaPredicted RBP10.44□□□□□ -0.74
USP28-215ENST00000545608 PSMC4P43686 418 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 GORABQ5T7V8 394 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 SPATA5Q8NB90 893 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 NSUN4Q96CB9 384 aaKnown RBP10.44□□□□□ -0.74
USP28-215ENST00000545608 TRIM47Q96LD4 638 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 PICK1Q9NRD5 415 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 AFG3L2Q9Y4W6 797 aa10.44□□□□□ -0.74
USP28-215ENST00000545608 A0A0G2JLL6 359 aaPredicted RBP10.43□□□□□ -0.74
USP28-215ENST00000545608 CTNND1O60716 968 aaKnown RBP10.43□□□□□ -0.74
USP28-215ENST00000545608 GNRH1P01148 92 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 LDHCP07864 332 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 OSBPP22059 807 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 MCAMP43121 646 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 PRMT2P55345 433 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 SLC4A8Q2Y0W8 1093 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 ZKSCAN2Q63HK3 967 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 PRRT2Q7Z6L0 340 aaPredicted RBP10.43□□□□□ -0.74
USP28-215ENST00000545608 CCDC84Q86UT8 332 aaPredicted RBP10.43□□□□□ -0.74
USP28-215ENST00000545608 RAI14Q9P0K7 980 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.43□□□□□ -0.74
USP28-215ENST00000545608 SRRDQ9UH36 339 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 MYH13Q9UKX3 1938 aa10.43□□□□□ -0.74
USP28-215ENST00000545608 FAM196BA6NMK8 535 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 TBC1D12O60347 775 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 FMNL1O95466 1100 aaPredicted RBP10.42□□□□□ -0.74
USP28-215ENST00000545608 UQCRFS1P1P0C7P4 283 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 BCRP11274 1271 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 GSTO1P78417 241 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 ATP8B2P98198 1209 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 MTFR1Q15390 333 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 GADL1Q6ZQY3 521 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 FASTKD5Q7L8L6 764 aaKnown RBP10.42□□□□□ -0.74
USP28-215ENST00000545608 PARK7Q99497 189 aaKnown RBP10.42□□□□□ -0.74
USP28-215ENST00000545608 DBNDD2Q9BQY9 259 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 C1orf115Q9H7X2 142 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 SNRKQ9NRH2 765 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 ZSWIM8A7E2V4 1837 aa10.42□□□□□ -0.74
USP28-215ENST00000545608 MYH2Q9UKX2 1941 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 TRIM75PA6NK02 468 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 TNRC18O15417 2968 aaPredicted RBP10.41□□□□□ -0.74
USP28-215ENST00000545608 HOXD10P28358 340 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 RRP1BQ14684 758 aaKnown RBP10.41□□□□□ -0.74
USP28-215ENST00000545608 TNNI3KQ59H18 835 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 SSH3Q8TE77 659 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.41□□□□□ -0.74
USP28-215ENST00000545608 GPR108Q9NPR9 543 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 LRP2BPQ9P2M1 347 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 FPGT-TNNI3KV9GXZ4 949 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 AK9Q5TCS8 1911 aa10.41□□□□□ -0.74
USP28-215ENST00000545608 MYPNQ86TC9 1320 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 ZBTB7BO15156 539 aaPredicted RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 SURF6O75683 361 aaKnown RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 MAP4K4O95819 1239 aaPredicted RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 RLBP1P12271 317 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 GRK4P32298 578 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 HNRNPUQ00839 825 aaKnown RBP eCLIP10.4□□□□□ -0.74
USP28-215ENST00000545608 PRKCZQ05513 592 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 MFSD10Q14728 455 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 TTC39AQ5SRH9 613 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 SMYD5Q6GMV2 418 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 TEX11Q8IYF3 940 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 RAET1EQ8TD07 263 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 SH3RF3Q8TEJ3 882 aaPredicted RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 DDX27Q96GQ7 796 aaKnown RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 OSBPL5Q9H0X9 879 aaPredicted RBP10.4□□□□□ -0.74
USP28-215ENST00000545608 GABRQQ9UN88 632 aa10.4□□□□□ -0.74
USP28-215ENST00000545608 CYP2E1P05181 493 aaPredicted RBP10.39□□□□□ -0.75
USP28-215ENST00000545608 FCGRTP55899 365 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 SPP2Q13103 211 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 OS9Q13438 667 aaPredicted RBP10.39□□□□□ -0.75
USP28-215ENST00000545608 TMEM132AQ24JP5 1023 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 CCDC158Q5M9N0 1113 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 TREML2Q5T2D2 321 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 NAA16Q6N069 864 aaPredicted RBP10.39□□□□□ -0.75
USP28-215ENST00000545608 MS4A3Q96HJ5 214 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 CRISPLD2Q9H0B8 497 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 AATFQ9NY61 560 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP28-215ENST00000545608 SLC45A1Q9Y2W3 748 aa10.39□□□□□ -0.75
USP28-215ENST00000545608 NOP58Q9Y2X3 529 aaKnown RBP10.39□□□□□ -0.75
USP28-215ENST00000545608 CAP2P40123 477 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 ZAP70P43403 619 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 PPP4CP60510 307 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 HABP4Q5JVS0 413 aaKnown RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 ADGRA1Q86SQ6 560 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 ITPRIPQ8IWB1 547 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 FTSJ3Q8IY81 847 aaKnown RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 TGFBRAP1Q8WUH2 860 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 EAF2Q96CJ1 260 aaPredicted RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 GCC1Q96CN9 775 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 SHISA4Q96DD7 197 aa10.38□□□□□ -0.75
USP28-215ENST00000545608 ZNF512BQ96KM6 892 aaPredicted RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 CCDC8Q9H0W5 538 aaPredicted RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 PIH1D3Q9NQM4 214 aaKnown RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 TLR7Q9NYK1 1049 aaKnown RBP10.38□□□□□ -0.75
USP28-215ENST00000545608 DBNLQ9UJU6 430 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms