RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 LDHBP07195 334 aaKnown RBP18.28■□□□□ 0.52
VARS2-212ENST00000542001 PPARAQ07869 468 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 CCDC144BQ3MJ40 725 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 CCDC40Q4G0X9 1142 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 GDAP1L1Q96MZ0 367 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 HEG1Q9ULI3 1381 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 FANCBQ8NB91 859 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 GNAT2P19087 354 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 TFAP4Q01664 338 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 NOSTRINQ8IVI9 506 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 GPCPD1Q9NPB8 672 aa18.28■□□□□ 0.52
VARS2-212ENST00000542001 CCDC175P0C221 793 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 CCDC148Q8NFR7 591 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 PLEKHA4Q9H4M7 779 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 EXOC1Q9NV70 894 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 RASGRF1Q13972 1273 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 BMS1Q14692 1282 aaKnown RBP18.27■□□□□ 0.52
VARS2-212ENST00000542001 IQUBQ8NA54 791 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 CALML4Q96GE6 196 aa18.27■□□□□ 0.52
VARS2-212ENST00000542001 CUTAO60888 179 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 KIF23Q02241 960 aaPredicted RBP18.27■□□□□ 0.51
VARS2-212ENST00000542001 PDIA6Q15084 440 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 TTC38Q5R3I4 469 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 ATL3Q6DD88 541 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 TBC1D10CQ8IV04 446 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 ZNF397Q8NF99 534 aaPredicted RBP18.27■□□□□ 0.51
VARS2-212ENST00000542001 CRACR2AQ9BSW2 395 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 ZNF287Q9HBT7 754 aa18.27■□□□□ 0.51
VARS2-212ENST00000542001 RTCBQ9Y3I0 505 aaKnown RBP18.27■□□□□ 0.51
VARS2-212ENST00000542001 WDR17Q8IZU2 1322 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 ZNF335Q9H4Z2 1342 aaPredicted RBP18.26■□□□□ 0.51
VARS2-212ENST00000542001 UBAP1LF5GYI3 381 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 DTHD1Q6ZMT9 781 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 TGFBRAP1Q8WUH2 860 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.26■□□□□ 0.51
VARS2-212ENST00000542001 GPR101Q96P66 508 aaPredicted RBP18.26■□□□□ 0.51
VARS2-212ENST00000542001 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.26■□□□□ 0.515e-7■■□□□ 12.2
VARS2-212ENST00000542001 CDC42BPGQ6DT37 1551 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 LDHCP07864 332 aa18.26■□□□□ 0.51
VARS2-212ENST00000542001 IBSPP21815 317 aaPredicted RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 ADD2P35612 726 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 ATG9AQ7Z3C6 839 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 TDRD7Q8NHU6 1098 aaKnown RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 ARFGAP3Q9NP61 516 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 CLTCQ00610 1675 aaKnown RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 CRKLP46109 303 aaKnown RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 CYB5R4Q7L1T6 521 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 NPHP4O75161 1426 aaPredicted RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 NRKQ7Z2Y5 1582 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 LOC102724428A0A0B4J2F2 783 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 TXKP42681 527 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 SIK1P57059 783 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 RNASE9P60153 205 aaKnown RBP18.25■□□□□ 0.51
VARS2-212ENST00000542001 FOXO4P98177 505 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 BRINP3Q76B58 766 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 RTEL1Q9NZ71 1219 aa18.25■□□□□ 0.51
VARS2-212ENST00000542001 MACROD2A1Z1Q3 448 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 USP27XA6NNY8 438 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 TMEM266Q2M3C6 531 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 UBE2Q2LH0YL09 131 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 CMA1P23946 247 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 SUSD4Q5VX71 490 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 DYMQ7RTS9 669 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 SLF1Q9BQI6 1058 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 FRMPD1Q5SYB0 1578 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 AKR1B15C9JRZ8 316 aaPredicted RBP18.24■□□□□ 0.51
VARS2-212ENST00000542001 PSMA7O14818 248 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 EIF3JO75822 258 aaKnown RBP18.24■□□□□ 0.51
VARS2-212ENST00000542001 RABEP2Q9H5N1 569 aa18.24■□□□□ 0.51
VARS2-212ENST00000542001 NOP2P46087 812 aaKnown RBP18.23■□□□□ 0.51
VARS2-212ENST00000542001 RPS8P62241 208 aaKnown RBP18.23■□□□□ 0.51
VARS2-212ENST00000542001 SENP2Q9HC62 589 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 TBC1D7Q9P0N9 293 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 DNAJC21Q5F1R6 531 aaKnown RBP18.23■□□□□ 0.51
VARS2-212ENST00000542001 TEX11Q8IYF3 940 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 TSPYL1Q9H0U9 437 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 PCDHB6Q9Y5E3 794 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 ZMYM6O95789 1325 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 H0YHG0 523 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 UFL1O94874 794 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 CPVLQ9H3G5 476 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 SLC39A14Q15043 492 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 CARD10Q9BWT7 1032 aa18.23■□□□□ 0.51
VARS2-212ENST00000542001 CCNL1Q9UK58 526 aaPredicted RBP18.23■□□□□ 0.51
VARS2-212ENST00000542001 FOXN1O15353 648 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 KRT9P35527 623 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 USP8P40818 1118 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 KRBA2Q6ZNG9 492 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 TMEM87AQ8NBN3 555 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 EPSTI1Q96J88 318 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 CSRNP2Q9H175 543 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 ZNF609O15014 1411 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 MYOM1P52179 1685 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 CDC27P30260 824 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 MROH5Q6ZUA9 1318 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 SYNRGQ9UMZ2 1314 aa18.22■□□□□ 0.51
VARS2-212ENST00000542001 PTGDRQ13258 359 aa18.21■□□□□ 0.51
VARS2-212ENST00000542001 USPL1Q5W0Q7 1092 aa18.21■□□□□ 0.51
VARS2-212ENST00000542001 SAMSN1Q9NSI8 373 aaKnown RBP18.21■□□□□ 0.51
VARS2-212ENST00000542001 SALL3Q9BXA9 1300 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms