RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-204ENST00000536079 TBC1D12O60347 775 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 PLCD1P51178 756 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 TTC22Q5TAA0 569 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 CCDC129Q6ZRS4 1044 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 FAM227BQ96M60 508 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 THSD7BQ9C0I4 1608 aa21.54■■□□□ 1.04
DDX55-204ENST00000536079 GPAA1O43292 621 aa21.53■■□□□ 1.04
DDX55-204ENST00000536079 JAG1P78504 1218 aa21.53■■□□□ 1.04
DDX55-204ENST00000536079 SHROOM1Q2M3G4 852 aaPredicted RBP21.53■■□□□ 1.04
DDX55-204ENST00000536079 METTL16Q86W50 562 aaKnown RBP21.53■■□□□ 1.04
DDX55-204ENST00000536079 DHX36Q9H2U1 1008 aaKnown RBP21.53■■□□□ 1.04
DDX55-204ENST00000536079 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.53■■□□□ 1.04
DDX55-204ENST00000536079 PI4KBQ9UBF8 816 aa21.53■■□□□ 1.04
DDX55-204ENST00000536079 SLC4A4Q9Y6R1 1079 aa21.53■■□□□ 1.04
DDX55-204ENST00000536079 CYP2D7A0A087X1C5 515 aa21.52■■□□□ 1.04
DDX55-204ENST00000536079 UNCXA6NJT0 531 aa21.52■■□□□ 1.04
DDX55-204ENST00000536079 MAP2K2P36507 400 aa21.52■■□□□ 1.04
DDX55-204ENST00000536079 NOGQ13253 232 aa21.52■■□□□ 1.04
DDX55-204ENST00000536079 OPTNQ96CV9 577 aa21.52■■□□□ 1.04
DDX55-204ENST00000536079 DDX60LQ5H9U9 1706 aaKnown RBP21.52■■□□□ 1.03
DDX55-204ENST00000536079 A0A0D9SFI3 127 aa21.51■■□□□ 1.03
DDX55-204ENST00000536079 GSG1L2A8MUP6 293 aa21.51■■□□□ 1.03
DDX55-204ENST00000536079 FOXP2O15409 715 aa21.51■■□□□ 1.03
DDX55-204ENST00000536079 CCDC84Q86UT8 332 aaPredicted RBP21.51■■□□□ 1.03
DDX55-204ENST00000536079 MCM9Q9NXL9 1143 aa21.51■■□□□ 1.03
DDX55-204ENST00000536079 CSADQ9Y600 493 aa21.51■■□□□ 1.03
DDX55-204ENST00000536079 SDSP20132 328 aa21.5■■□□□ 1.03
DDX55-204ENST00000536079 NMIQ13287 307 aaPredicted RBP21.5■■□□□ 1.03
DDX55-204ENST00000536079 NOL9Q5SY16 702 aaKnown RBP21.5■■□□□ 1.03
DDX55-204ENST00000536079 EPB41L4AQ9HCS5 686 aaPredicted RBP21.5■■□□□ 1.03
DDX55-204ENST00000536079 ATP8A2Q9NTI2 1148 aa21.5■■□□□ 1.03
DDX55-204ENST00000536079 WBP1LQ9NX94 342 aa21.5■■□□□ 1.03
DDX55-204ENST00000536079 SPDYE5A6NIY4 337 aa21.49■■□□□ 1.03
DDX55-204ENST00000536079 POLR3DP05423 398 aaPredicted RBP21.49■■□□□ 1.03
DDX55-204ENST00000536079 LRRFIP1Q32MZ4 808 aaKnown RBP21.49■■□□□ 1.03
DDX55-204ENST00000536079 FOXP4Q8IVH2 680 aaPredicted RBP21.49■■□□□ 1.03
DDX55-204ENST00000536079 DYNLL2Q96FJ2 89 aa21.49■■□□□ 1.03
DDX55-204ENST00000536079 OTUD5Q96G74 571 aa21.49■■□□□ 1.03
DDX55-204ENST00000536079 HERC5Q9UII4 1024 aaKnown RBP21.49■■□□□ 1.03
DDX55-204ENST00000536079 MYH1P12882 1939 aa21.49■■□□□ 1.03
DDX55-204ENST00000536079 NAV1Q8NEY1 1877 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 USP17L12C9JPN9 530 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 USP17L21D6R901 530 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 HLA-DOAP06340 250 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 HSPA1AP0DMV8 641 aaKnown RBP21.48■■□□□ 1.03
DDX55-204ENST00000536079 HSPA1BP0DMV9 641 aaKnown RBP21.48■■□□□ 1.03
DDX55-204ENST00000536079 VPS53Q5VIR6 699 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 CTR9Q6PD62 1173 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 ZNF589Q86UQ0 364 aaPredicted RBP21.48■■□□□ 1.03
DDX55-204ENST00000536079 SCYL3Q8IZE3 742 aa21.48■■□□□ 1.03
DDX55-204ENST00000536079 GABPAQ06546 454 aa21.47■■□□□ 1.03
DDX55-204ENST00000536079 CRACR2BQ8N4Y2 399 aaPredicted RBP21.47■■□□□ 1.03
DDX55-204ENST00000536079 SLC44A5Q8NCS7 719 aa21.47■■□□□ 1.03
DDX55-204ENST00000536079 MS4A4AQ96JQ5 239 aa21.47■■□□□ 1.03
DDX55-204ENST00000536079 PPP4R2Q9NY27 417 aa21.47■■□□□ 1.03
DDX55-204ENST00000536079 IRF6O14896 467 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 CTNND1O60716 968 aaKnown RBP21.46■■□□□ 1.03
DDX55-204ENST00000536079 ZBTB48P10074 688 aaPredicted RBP21.46■■□□□ 1.03
DDX55-204ENST00000536079 PTPRAP18433 802 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 SHMT1P34896 483 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 CAP2P40123 477 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 C12orf60Q5U649 245 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 ERO1BQ86YB8 467 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 EHD4Q9H223 541 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 IL25Q9H293 177 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 HELLSQ9NRZ9 838 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 SERPINB13Q9UIV8 391 aa21.46■■□□□ 1.03
DDX55-204ENST00000536079 PATL2C9JE40 543 aaKnown RBP21.45■■□□□ 1.02
DDX55-204ENST00000536079 GDF11O95390 407 aa21.45■■□□□ 1.02
DDX55-204ENST00000536079 MCMDC2Q4G0Z9 681 aa21.45■■□□□ 1.02
DDX55-204ENST00000536079 ERICH6BQ5W0A0 696 aa21.45■■□□□ 1.02
DDX55-204ENST00000536079 TATDN1Q6P1N9 297 aa21.45■■□□□ 1.02
DDX55-204ENST00000536079 PTPN18Q99952 460 aa21.45■■□□□ 1.02
DDX55-204ENST00000536079 BAZ2AQ9UIF9 1905 aaKnown RBP21.45■■□□□ 1.02
DDX55-204ENST00000536079 FOXN1O15353 648 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 TM4SF4P48230 202 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 MAP2K1Q02750 393 aaPredicted RBP21.44■■□□□ 1.02
DDX55-204ENST00000536079 PPATQ06203 517 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 PPIL2Q13356 520 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 IFNL3Q8IZI9 196 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 TSKSQ9UJT2 592 aa21.44■■□□□ 1.02
DDX55-204ENST00000536079 APPP05067 770 aa21.43■■□□□ 1.02
DDX55-204ENST00000536079 CWC27Q6UX04 472 aaKnown RBP21.43■■□□□ 1.02
DDX55-204ENST00000536079 TICAM2Q86XR7 235 aa21.43■■□□□ 1.02
DDX55-204ENST00000536079 BRI3BPQ8WY22 251 aa21.43■■□□□ 1.02
DDX55-204ENST00000536079 RNF186Q9NXI6 227 aa21.43■■□□□ 1.02
DDX55-204ENST00000536079 ZHX2Q9Y6X8 837 aa21.43■■□□□ 1.02
DDX55-204ENST00000536079 TESPA1A2RU30 521 aaPredicted RBP21.42■■□□□ 1.02
DDX55-204ENST00000536079 IGF2BP3O00425 579 aaKnown RBP eCLIP21.42■■□□□ 1.02
DDX55-204ENST00000536079 GNAT2P19087 354 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 SBK1Q52WX2 424 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 GIMAP6Q6P9H5 292 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 STK11IPQ8N1F8 1099 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 TRIM34Q9BYJ4 488 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 PICK1Q9NRD5 415 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 AFG3L2Q9Y4W6 797 aa21.42■■□□□ 1.02
DDX55-204ENST00000536079 MANSC4A6NHS7 340 aaPredicted RBP21.41■■□□□ 1.02
DDX55-204ENST00000536079 MOGSQ13724 837 aa21.41■■□□□ 1.02
DDX55-204ENST00000536079 DIAPH3Q9NSV4 1193 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms