RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CAVIN4Q5BKX8 364 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 GORABQ5T7V8 394 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 FBXO33Q7Z6M2 555 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.01□□□□□ -0.97
CD44-228ENST00000528455 FOXJ1Q92949 421 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 RTFDC1Q9BY42 306 aaPredicted RBP9.01□□□□□ -0.97
CD44-228ENST00000528455 DBNLQ9UJU6 430 aaKnown RBP9.01□□□□□ -0.97
CD44-228ENST00000528455 GPSM3Q9Y4H4 160 aa9.01□□□□□ -0.97
CD44-228ENST00000528455 UQCRFS1P1P0C7P4 283 aa9□□□□□ -0.97
CD44-228ENST00000528455 HSPA6P17066 643 aa9□□□□□ -0.97
CD44-228ENST00000528455 HIBADHP31937 336 aaKnown RBP9□□□□□ -0.97
CD44-228ENST00000528455 KCNJ4P48050 445 aa9□□□□□ -0.97
CD44-228ENST00000528455 RGS3P49796 1198 aa9□□□□□ -0.97
CD44-228ENST00000528455 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
CD44-228ENST00000528455 DPP8Q6V1X1 898 aaPredicted RBP9□□□□□ -0.97
CD44-228ENST00000528455 SH3RF1Q7Z6J0 888 aa9□□□□□ -0.97
CD44-228ENST00000528455 SUPT20HQ8NEM7 779 aa9□□□□□ -0.97
CD44-228ENST00000528455 TBC1D16Q8TBP0 767 aa9□□□□□ -0.97
CD44-228ENST00000528455 OTUD7AQ8TE49 926 aaPredicted RBP9□□□□□ -0.97
CD44-228ENST00000528455 FAM84BQ96KN1 310 aaPredicted RBP9□□□□□ -0.97
CD44-228ENST00000528455 DBNDD2Q9BQY9 259 aa9□□□□□ -0.97
CD44-228ENST00000528455 ZC3H12CQ9C0D7 883 aaKnown RBP9□□□□□ -0.97
CD44-228ENST00000528455 GNL3LQ9NVN8 582 aaKnown RBP9□□□□□ -0.97
CD44-228ENST00000528455 POLLQ9UGP5 575 aa9□□□□□ -0.97
CD44-228ENST00000528455 GGA1Q9UJY5 639 aa9□□□□□ -0.97
CD44-228ENST00000528455 FER1L6Q2WGJ9 1857 aa9□□□□□ -0.97
CD44-228ENST00000528455 RGS20O76081 388 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 FBXO45P0C2W1 286 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 VEGFAP15692 232 aaPredicted RBP8.99□□□□□ -0.97
CD44-228ENST00000528455 FKBP4Q02790 459 aaKnown RBP eCLIP8.99□□□□□ -0.97
CD44-228ENST00000528455 PTK2Q05397 1052 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 BMP2KLQ5H9B9 411 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 CCDC102BQ68D86 513 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 ZNF598Q86UK7 904 aaKnown RBP8.99□□□□□ -0.97
CD44-228ENST00000528455 PI4K2BQ8TCG2 481 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 PSMD1Q99460 953 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 EYA3Q99504 573 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 BCL11AQ9H165 835 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 COL4A1P02462 1669 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 CACNA1SQ13698 1873 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 IRS2Q9Y4H2 1338 aa8.99□□□□□ -0.97
CD44-228ENST00000528455 LRRC37AA6NMS7 1700 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 WTIPA6NIX2 430 aaPredicted RBP8.98□□□□□ -0.97
CD44-228ENST00000528455 ZBBXA8MT70 800 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 SNAP23O00161 211 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 IGSF3O75054 1194 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 ARID4AP29374 1257 aaPredicted RBP8.98□□□□□ -0.97
CD44-228ENST00000528455 ADORA1P30542 326 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 WASHC4Q2M389 1173 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 TTC39AQ5SRH9 613 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 TTC22Q5TAA0 569 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 ZNF697Q5TEC3 545 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 BPHLQ86WA6 291 aaPredicted RBP8.98□□□□□ -0.97
CD44-228ENST00000528455 VPS37DQ86XT2 251 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 HAUS7Q99871 368 aa8.98□□□□□ -0.97
CD44-228ENST00000528455 DICER1Q9UPY3 1922 aaKnown RBP8.97□□□□□ -0.97
CD44-228ENST00000528455 A0A1B0GUL6 1792 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 UFL1O94874 794 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 IL1R1P14778 569 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 FSTL1Q12841 308 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 NR1H3Q13133 447 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 OLFM4Q6UX06 510 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 ZNF804AQ7Z570 1209 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 PODNQ7Z5L7 613 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 TDRD7Q8NHU6 1098 aaKnown RBP8.97□□□□□ -0.97
CD44-228ENST00000528455 EVI5LQ96CN4 794 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 ARHGAP9Q9BRR9 750 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 COA1Q9GZY4 146 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 BOLA2Q9H3K6 86 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 ZNF277Q9NRM2 450 aaPredicted RBP8.97□□□□□ -0.97
CD44-228ENST00000528455 TLR7Q9NYK1 1049 aaKnown RBP8.97□□□□□ -0.97
CD44-228ENST00000528455 DENND2AQ9ULE3 1009 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 ZNF609O15014 1411 aa8.97□□□□□ -0.97
CD44-228ENST00000528455 AKAP11Q9UKA4 1901 aa8.96□□□□□ -0.97
CD44-228ENST00000528455 TRAK2O60296 914 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 SDSP20132 328 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 PHKA1P46020 1223 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 GYG1P46976 350 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 AGERQ15109 404 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 TTF1Q15361 905 aaPredicted RBP8.96□□□□□ -0.98
CD44-228ENST00000528455 TMED8Q6PL24 325 aaPredicted RBP8.96□□□□□ -0.98
CD44-228ENST00000528455 TXNRD3Q86VQ6 643 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 SKAP1Q86WV1 359 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 SPATA5Q8NB90 893 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 SMC1BQ8NDV3 1235 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 JDP2Q8WYK2 163 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 CD209Q9NNX6 404 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 PDS5AQ29RF7 1337 aaKnown RBP8.96□□□□□ -0.98
CD44-228ENST00000528455 TIAM2Q8IVF5 1701 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 MED23Q9ULK4 1368 aa8.96□□□□□ -0.98
CD44-228ENST00000528455 LTBP1Q14766 1721 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 ARAP2Q8WZ64 1704 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 MAGEB6P1A0A0J9YX57 407 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 IQCA1LA6NCM1 817 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 WNT7AO00755 349 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 EIF5BO60841 1220 aaKnown RBP8.95□□□□□ -0.98
CD44-228ENST00000528455 FRAT2O75474 233 aaPredicted RBP8.95□□□□□ -0.98
CD44-228ENST00000528455 DDNO94850 711 aaPredicted RBP8.95□□□□□ -0.98
CD44-228ENST00000528455 IARSP41252 1262 aaKnown RBP8.95□□□□□ -0.98
CD44-228ENST00000528455 MCAMP43121 646 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms