RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 PHIPQ8WWQ0 1821 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 XDHP47989 1333 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 RAB11FIP3O75154 756 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 PMLP29590 882 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 KIAA2012Q0VF49 1180 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 DDX46Q7L014 1031 aaKnown RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 ERC1Q8IUD2 1116 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 TSPYL6Q8N831 410 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 AGBL3Q8NEM8 1001 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 TTLL11Q8NHH1 800 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 C11orf49Q9H6J7 331 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 GINM1Q9NU53 330 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 PPP2R3BQ9Y5P8 575 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 USP9XQ93008 2570 aaPredicted RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 ACACBO00763 2458 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 IRS4O14654 1257 aaPredicted RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 GRK4P32298 578 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 RFX5P48382 616 aaPredicted RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 PROSER3Q2NL68 480 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 FKBP1CQ5VVH2 108 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 PODNQ7Z5L7 613 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 THUMPD2Q9BTF0 503 aaKnown RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 COA1Q9GZY4 146 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 TMX4Q9H1E5 349 aaPredicted RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 SRP68Q9UHB9 627 aaKnown RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 FLNBO75369 2602 aaKnown RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 LAMA2P24043 3122 aaKnown RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 FOCADQ5VW36 1801 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 PI4KAP2A4QPH2 592 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 IL1R1P14778 569 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 EMP3P54852 163 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 MTFR1Q15390 333 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 FAM9BQ8IZU0 186 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 PI4KAP1Q8N8J0 262 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 SSH3Q8TE77 659 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 RPGRQ92834 1020 aaKnown RBP3.53□□□□□ -1.84
MCF2-208ENST00000519895 RAI2Q9Y5P3 530 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 ZNF804BA4D1E1 1349 aa3.53□□□□□ -1.84
MCF2-208ENST00000519895 ANKRD18BA2A2Z9 1011 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 FGFR2P21802 821 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 IL15P40933 162 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 MFAP1P55081 439 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 ZNF280AP59817 542 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 RPS8P62241 208 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 ATP8B2P98198 1209 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 PDE4DQ08499 809 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TNIP1Q15025 636 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 LEXMQ3ZCV2 418 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 LARP1BQ659C4 914 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 ANKRD44Q8N8A2 993 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 EDAQ92838 391 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TIFAQ96CG3 184 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 RNF208Q9H0X6 261 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 CD320Q9NPF0 282 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TRMT112Q9UI30 125 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 AKAP2Q9Y2D5 859 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 RRP7AQ9Y3A4 280 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 MAST3O60307 1309 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 MAP1BP46821 2468 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 PRAMEF22A3QJZ6 481 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TRIM66O15016 1216 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 E2F4Q16254 413 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 ANKRD18AQ8IVF6 992 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 DZIP1LQ8IYY4 767 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 VGLL2Q8N8G2 317 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 SH3TC2Q8TF17 1288 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TBC1D22AQ8WUA7 517 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 HLA-CQ95604 372 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 KIF12Q96FN5 646 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 ZBED3Q96IU2 234 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 TBC1D2Q9BYX2 928 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 USP44Q9H0E7 712 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 MYH13Q9UKX3 1938 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TBC1D2BQ9UPU7 963 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 RALGAPA2Q2PPJ7 1873 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 SHTN1A0MZ66 631 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 HMMRO75330 724 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 GNAI2P04899 355 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 PLA2G2AP14555 144 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 DNAJB2P25686 324 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 IGHMBP2P38935 993 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 HDAC1Q13547 482 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 MVPQ14764 893 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 RBM26Q5T8P6 1007 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 DCAF8Q5TAQ9 597 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 PRPF40BQ6NWY9 871 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 PXYLP1Q8TE99 480 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TSR2Q969E8 191 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 PAWRQ96IZ0 340 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 MYD88Q99836 296 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 MAF1Q9H063 256 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 GZF1Q9H116 711 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 PHAXQ9H814 394 aaKnown RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 BMP2KQ9NSY1 1161 aaPredicted RBP3.52□□□□□ -1.85
MCF2-208ENST00000519895 SMC4Q9NTJ3 1288 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 ZMIZ1Q9ULJ6 1067 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 SRPK3Q9UPE1 567 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 RIPOR2Q9Y4F9 1068 aa3.52□□□□□ -1.85
MCF2-208ENST00000519895 TRANK1O15050 2925 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms