RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ARID4AP29374 1257 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 GRIPAP1Q4V328 841 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 SHC4Q6S5L8 630 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 METTL16Q86W50 562 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 OR2W6PQ8NHA6 318 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 C8orf76Q96K31 380 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 NUP88Q99567 741 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 LRRC1Q9BTT6 524 aa8.2□□□□□ -1.1
LIMCH1-207ENST00000508466 SBNO2Q9Y2G9 1366 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 CBFA2T2O43439 604 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 ANKRD1Q15327 319 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 HLFQ16534 295 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 CMTR1Q8N1G2 835 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 JMYQ8N9B5 988 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 LMBR1Q8WVP7 490 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 MYL10Q9BUA6 226 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 HOOK1Q9UJC3 728 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 ZC3H4Q9UPT8 1303 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 ADGRB2O60241 1585 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 SBNO1A3KN83 1393 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 COL15A1P39059 1388 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 MYL6BP14649 208 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 ERVK-24P63145 666 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 PREPLQ4J6C6 727 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 TRIM68Q6AZZ1 485 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 ATL3Q6DD88 541 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 PARP9Q8IXQ6 854 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 NSMCE1Q8WV22 266 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 EVI5LQ96CN4 794 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 LAMC1P11047 1609 aa8.19□□□□□ -1.1
LIMCH1-207ENST00000508466 POLR2DO15514 142 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 PPFIA1Q13136 1202 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 NNTQ13423 1086 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 SNCBQ16143 134 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 NAA35Q5VZE5 725 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 COG3Q96JB2 828 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 CHPF2Q9P2E5 772 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 PRAMEF22A3QJZ6 481 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 SASH1O94885 1247 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 FAM153BP0C7A2 387 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 RANBP1P43487 201 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 USP14P54578 494 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 QPCTQ16769 361 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 FAM153CQ494X1 144 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 HIBCHQ6NVY1 386 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 CYB5D1Q6P9G0 228 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 POTEDQ86YR6 584 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 ARMC2Q8NEN0 867 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 RUFY1Q96T51 708 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 GBP3Q9H0R5 595 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 FAM153AQ9UHL3 310 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 SERTAD1Q9UHV2 236 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 ADAMTS12P58397 1594 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 COL3A1P02461 1466 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 PDIA3P30101 505 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 PPP1R7Q15435 360 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 ANO1Q5XXA6 986 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 C3orf20Q8ND61 904 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 CCT8L2Q96SF2 557 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 INCENPQ9NQS7 918 aa8.18□□□□□ -1.1
LIMCH1-207ENST00000508466 PHF20L1A8MW92 1017 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 CPLX1O14810 134 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 MAP3K13O43283 966 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 BUB1BO60566 1050 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 RTN2O75298 545 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 EZRP15311 586 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 LSP1P33241 339 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 CCNI2Q6ZMN8 369 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 TBC1D1Q86TI0 1168 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 FMNL3Q8IVF7 1028 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 ZNF473Q8WTR7 871 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 PRCCQ92733 491 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 PIDD1Q9HB75 910 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 SNRKQ9NRH2 765 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 TAB2Q9NYJ8 693 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 PLCH2O75038 1416 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 A0A1B0GUA9 196 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 NCK2O43639 380 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 CNGA1P29973 690 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 TBX2Q13207 712 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 CCDC122Q5T0U0 273 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 NKX2-3Q8TAU0 364 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 MS4A14Q96JA4 679 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 NEUROD6Q96NK8 337 aa8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 SPATS2LQ9NUQ6 558 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-207ENST00000508466 RCCD1A6NED2 376 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 ECEL1O95672 775 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 TUBB4AP04350 444 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 ARHGAP25P42331 645 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 G3BP1Q13283 466 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 FAM133BQ5BKY9 247 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 EFCAB2Q5VUJ9 269 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 CCDC121Q6ZUS5 278 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 FAM47EQ6ZV65 393 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 MAATS1Q7Z4T9 603 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 FUKQ8N0W3 1084 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 SPIRE2Q8WWL2 714 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 CCDC43Q96MW1 224 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 LACRTQ9GZZ8 138 aa8.16□□□□□ -1.1
LIMCH1-207ENST00000508466 C19orf44Q9H6X5 657 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms