RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SPP2Q13103 211 aa18.21■□□□□ 0.51
TRAF4-212ENST00000498540 PI16Q6UXB8 463 aa18.21■□□□□ 0.51
TRAF4-212ENST00000498540 ERICH6Q7L0X2 663 aa18.21■□□□□ 0.51
TRAF4-212ENST00000498540 PROCA1Q8NCQ7 364 aaPredicted RBP18.21■□□□□ 0.51
TRAF4-212ENST00000498540 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.21■□□□□ 0.515e-7■■□□□ 13.3
TRAF4-212ENST00000498540 STAP2Q9UGK3 403 aa18.21■□□□□ 0.51
TRAF4-212ENST00000498540 SIPA1L1O43166 1804 aa18.21■□□□□ 0.51
TRAF4-212ENST00000498540 COL2A1P02458 1487 aaPredicted RBP18.2■□□□□ 0.5
TRAF4-212ENST00000498540 NPM3O75607 178 aaKnown RBP18.2■□□□□ 0.5
TRAF4-212ENST00000498540 HMGCS2P54868 508 aa18.2■□□□□ 0.5
TRAF4-212ENST00000498540 RRP1BQ14684 758 aaKnown RBP18.2■□□□□ 0.5
TRAF4-212ENST00000498540 LRCH3Q96II8 777 aa18.2■□□□□ 0.5
TRAF4-212ENST00000498540 OSBPL5Q9H0X9 879 aaPredicted RBP18.2■□□□□ 0.5
TRAF4-212ENST00000498540 DDX60LQ5H9U9 1706 aaKnown RBP18.2■□□□□ 0.5
TRAF4-212ENST00000498540 CAPN2P17655 700 aa18.19■□□□□ 0.5
TRAF4-212ENST00000498540 MVPQ14764 893 aaKnown RBP18.19■□□□□ 0.5
TRAF4-212ENST00000498540 ZNF280CQ8ND82 737 aa18.19■□□□□ 0.5
TRAF4-212ENST00000498540 API5Q9BZZ5 524 aaKnown RBP18.19■□□□□ 0.5
TRAF4-212ENST00000498540 HMG20BQ9P0W2 317 aa18.19■□□□□ 0.5
TRAF4-212ENST00000498540 HDAC5Q9UQL6 1122 aa18.19■□□□□ 0.5
TRAF4-212ENST00000498540 SRGAP3O43295 1099 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 HMGCRP04035 888 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 TRIM32Q13049 653 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 TBC1D9Q6ZT07 1266 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 NECAB2Q7Z6G3 386 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 TRMT2AQ8IZ69 625 aaKnown RBP18.18■□□□□ 0.5
TRAF4-212ENST00000498540 NSUN4Q96CB9 384 aaKnown RBP18.18■□□□□ 0.5
TRAF4-212ENST00000498540 ASCC2Q9H1I8 757 aaPredicted RBP18.18■□□□□ 0.5
TRAF4-212ENST00000498540 AKAP2Q9Y2D5 859 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 COL6A3P12111 3177 aa18.18■□□□□ 0.5
TRAF4-212ENST00000498540 CAP2P40123 477 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 GCLCP48506 637 aaPredicted RBP18.17■□□□□ 0.5
TRAF4-212ENST00000498540 C7orf61Q8IZ16 206 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 SPATA5Q8NB90 893 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 NEUROD6Q96NK8 337 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 GJD2Q9UKL4 321 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 CDK5RAP2Q96SN8 1893 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 MAST2Q6P0Q8 1798 aa18.17■□□□□ 0.5
TRAF4-212ENST00000498540 MNX1P50219 401 aaPredicted RBP18.16■□□□□ 0.5
TRAF4-212ENST00000498540 GSTO1P78417 241 aa18.16■□□□□ 0.5
TRAF4-212ENST00000498540 USP17L5A8MUK1 530 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 LDHCP07864 332 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 PABPC4Q13310 644 aaKnown RBP eCLIP18.15■□□□□ 0.5
TRAF4-212ENST00000498540 MTX1Q13505 466 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 SH3D19Q5HYK7 790 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 TEX11Q8IYF3 940 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 ANKLE1Q8NAG6 615 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 SLC17A8Q8NDX2 589 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 GDF15Q99988 308 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 TBC1D2Q9BYX2 928 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 RAI14Q9P0K7 980 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 ZMYND8Q9ULU4 1186 aaPredicted RBP18.15■□□□□ 0.5
TRAF4-212ENST00000498540 RPTORQ8N122 1335 aa18.15■□□□□ 0.5
TRAF4-212ENST00000498540 FOCADQ5VW36 1801 aa18.14■□□□□ 0.5
TRAF4-212ENST00000498540 PEX10O60683 326 aa18.14■□□□□ 0.49
TRAF4-212ENST00000498540 MAP4K4O95819 1239 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-212ENST00000498540 CT47B1P0C2W7 299 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-212ENST00000498540 ARID4AP29374 1257 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-212ENST00000498540 MCAMP43121 646 aa18.14■□□□□ 0.49
TRAF4-212ENST00000498540 SH3RF3Q8TEJ3 882 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-212ENST00000498540 TRIB2Q92519 343 aa18.14■□□□□ 0.49
TRAF4-212ENST00000498540 HMX1Q9NP08 348 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-212ENST00000498540 GNAI3P08754 354 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 MTMR2Q13614 643 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 GORABQ5T7V8 394 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 NBPF3Q9H094 633 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 AS3MTQ9HBK9 375 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 MORF4L1Q9UBU8 362 aa18.13■□□□□ 0.49
TRAF4-212ENST00000498540 HERC5Q9UII4 1024 aaKnown RBP18.13■□□□□ 0.49
TRAF4-212ENST00000498540 MYO5AQ9Y4I1 1855 aaKnown RBP18.12■□□□□ 0.49
TRAF4-212ENST00000498540 DLL1O00548 723 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 SYN1P17600 705 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 BMP8BP34820 402 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 JAG1P78504 1218 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 SHROOM1Q2M3G4 852 aaPredicted RBP18.12■□□□□ 0.49
TRAF4-212ENST00000498540 DNAJC18Q9H819 358 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 TXNRD2Q9NNW7 524 aa18.12■□□□□ 0.49
TRAF4-212ENST00000498540 CYP2B6P20813 491 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 RARSP54136 660 aaKnown RBP18.11■□□□□ 0.49
TRAF4-212ENST00000498540 BACE1P56817 501 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 IRX3P78415 501 aaPredicted RBP18.11■□□□□ 0.49
TRAF4-212ENST00000498540 MAP3K21Q5TCX8 1036 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 WDR18Q9BV38 432 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 C11orf49Q9H6J7 331 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 LRP2BPQ9P2M1 347 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 PI4KBQ9UBF8 816 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 OGDHLQ9ULD0 1010 aa18.11■□□□□ 0.49
TRAF4-212ENST00000498540 PFASO15067 1338 aa18.1■□□□□ 0.49
TRAF4-212ENST00000498540 PRKAR2AP13861 404 aaKnown RBP18.1■□□□□ 0.49
TRAF4-212ENST00000498540 P2RX7Q99572 595 aaKnown RBP18.1■□□□□ 0.49
TRAF4-212ENST00000498540 AATFQ9NY61 560 aaKnown RBP eCLIP18.1■□□□□ 0.49
TRAF4-212ENST00000498540 FLT1P17948 1338 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 PNMA6EA0A0J9YXQ4 647 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 ASNSP08243 561 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 HOXA7P31268 230 aaPredicted RBP18.09■□□□□ 0.49
TRAF4-212ENST00000498540 MAGEA10P43363 369 aaPredicted RBP18.09■□□□□ 0.49
TRAF4-212ENST00000498540 HERVK_113P62684 666 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 ADGRA1Q86SQ6 560 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 MAPKAPK5Q8IW41 473 aa18.09■□□□□ 0.49
TRAF4-212ENST00000498540 ARHGAP45Q92619 1136 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms