RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 TSPY8P0CW00 308 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 GJB2P29033 226 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 KIF5BP33176 963 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 METAP2P50579 478 aaKnown RBP eCLIP9.88□□□□□ -0.833e-6■■■■□ 25.7
SF3A1-210ENST00000498259 APOBRQ0VD83 1088 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 STK3Q13188 491 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 DLGAP5Q15398 846 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 SKOR2Q2VWA4 1001 aaPredicted RBP9.88□□□□□ -0.83
SF3A1-210ENST00000498259 IFIT1BQ5T764 474 aaKnown RBP9.88□□□□□ -0.83
SF3A1-210ENST00000498259 IFFO2Q5TF58 517 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 CIAPIN1Q6FI81 312 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 CLEC17AQ6ZS10 378 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 CHST3Q7LGC8 479 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 DGKHQ86XP1 1220 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 MAPKAPK5Q8IW41 473 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 TRIM22Q8IYM9 498 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 CERS5Q8N5B7 392 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 IGDCC4Q8TDY8 1250 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 ZNF277Q9NRM2 450 aaPredicted RBP9.88□□□□□ -0.83
SF3A1-210ENST00000498259 RBM28Q9NW13 759 aaKnown RBP9.88□□□□□ -0.83
SF3A1-210ENST00000498259 MKRN1Q9UHC7 482 aaKnown RBP9.88□□□□□ -0.83
SF3A1-210ENST00000498259 SNED1Q8TER0 1413 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 ROBO3Q96MS0 1386 aa9.88□□□□□ -0.83
SF3A1-210ENST00000498259 NEDD4P46934 1319 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 ENTPD3O75355 529 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 XBP1P17861 261 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 NCLP19338 710 aaKnown RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 GNAQP50148 359 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 SCNN1DP51172 638 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 RHBDL3P58872 404 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 AKAP17AQ02040 695 aaKnown RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 SCRN1Q12765 414 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 TRIM29Q14134 588 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 NFKBIBQ15653 356 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 FOXP4Q8IVH2 680 aaPredicted RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 NECAB1Q8N987 351 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 TNPO1Q92973 898 aaKnown RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 CCDC17Q96LX7 622 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 IDI2Q9BXS1 227 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 LRRC2Q9BYS8 371 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 EHD4Q9H223 541 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 ZSCAN16Q9H4T2 348 aaPredicted RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 TCP11L1Q9NUJ3 509 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 RBM27Q9P2N5 1060 aaKnown RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 PI4KBQ9UBF8 816 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 SERPINB13Q9UIV8 391 aa9.87□□□□□ -0.83
SF3A1-210ENST00000498259 MYO5AQ9Y4I1 1855 aaKnown RBP9.87□□□□□ -0.83
SF3A1-210ENST00000498259 LAMA4Q16363 1823 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 TNKSO95271 1327 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 GOLGA8AA7E2F4 631 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 DDAH1O94760 285 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 BRD1O95696 1058 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 ZSCAN22P10073 491 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 SYT1P21579 422 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 TNNI2P48788 182 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 ANTXR2P58335 489 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 GRIK5Q16478 980 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 FKBP1CQ5VVH2 108 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 APOBEC3HQ6NTF7 200 aaKnown RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 CDC42EP5Q6NZY7 148 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 APOA5Q6Q788 366 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 C16orf86Q6ZW13 317 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 CYB5R4Q7L1T6 521 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 TIAM2Q8IVF5 1701 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 CRACR2BQ8N4Y2 399 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 MTMR14Q8NCE2 650 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 CTCFLQ8NI51 663 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 MAP3K14Q99558 947 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 LARP6Q9BRS8 491 aaKnown RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 OSBPL5Q9H0X9 879 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 KAT14Q9H8E8 782 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 LY9Q9HBG7 655 aa9.86□□□□□ -0.83
SF3A1-210ENST00000498259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.86□□□□□ -0.83
SF3A1-210ENST00000498259 PSMD14O00487 310 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 RAD17O75943 681 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 MCM4P33991 863 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 CCT2P78371 535 aaKnown RBP9.85□□□□□ -0.83
SF3A1-210ENST00000498259 TFAP4Q01664 338 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 SSRP1Q08945 709 aaKnown RBP9.85□□□□□ -0.83
SF3A1-210ENST00000498259 PICALMQ13492 652 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 TNFAIP1Q13829 316 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 RTN1Q16799 776 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 CFAP100Q494V2 611 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 SLC51AQ86UW1 340 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 ZSCAN29Q8IWY8 852 aaPredicted RBP9.85□□□□□ -0.83
SF3A1-210ENST00000498259 FANCBQ8NB91 859 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 SMARCC2Q8TAQ2 1214 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 ANKS1AQ92625 1134 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 DPF2Q92785 391 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 HOOK2Q96ED9 719 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 LZTS2Q9BRK4 669 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 MYH2Q9UKX2 1941 aa9.85□□□□□ -0.83
SF3A1-210ENST00000498259 PTPDC1A2A3K4 754 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 VPS37CA5D8V6 355 aaPredicted RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 YDJCA8MPS7 323 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 WDHD1O75717 1129 aaPredicted RBP9.84□□□□□ -0.83
SF3A1-210ENST00000498259 LARGE1O95461 756 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 LMNB1P20700 586 aa9.84□□□□□ -0.83
SF3A1-210ENST00000498259 CDK8P49336 464 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms