RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 GCLCP48506 637 aaPredicted RBP17.31■□□□□ 0.36
VARS-227ENST00000489979 MECOMQ03112 1051 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 ERICH6Q7L0X2 663 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 ANKLE1Q8NAG6 615 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 ZNF280CQ8ND82 737 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 GDF15Q99988 308 aa17.31■□□□□ 0.36
VARS-227ENST00000489979 OSBPL5Q9H0X9 879 aaPredicted RBP17.31■□□□□ 0.36
VARS-227ENST00000489979 ZMYND8Q9ULU4 1186 aaPredicted RBP17.31■□□□□ 0.36
VARS-227ENST00000489979 NPM3O75607 178 aaKnown RBP17.3■□□□□ 0.36
VARS-227ENST00000489979 BMP8BP34820 402 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 HMGCS2P54868 508 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 SLFN5Q08AF3 891 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 TRIM32Q13049 653 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 ZNF384Q8TF68 577 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 XAGE2Q96GT9 111 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 GJD2Q9UKL4 321 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 A0A0C4DFX4 3053 aa17.3■□□□□ 0.36
VARS-227ENST00000489979 RPTORQ8N122 1335 aa17.29■□□□□ 0.36
VARS-227ENST00000489979 A0A1B0GUL7 405 aa17.29■□□□□ 0.36
VARS-227ENST00000489979 PABPC4Q13310 644 aaKnown RBP eCLIP17.29■□□□□ 0.36
VARS-227ENST00000489979 RRP1BQ14684 758 aaKnown RBP17.29■□□□□ 0.36
VARS-227ENST00000489979 ASCC2Q9H1I8 757 aaPredicted RBP17.29■□□□□ 0.36
VARS-227ENST00000489979 HMX1Q9NP08 348 aaPredicted RBP17.29■□□□□ 0.36
VARS-227ENST00000489979 DDX60LQ5H9U9 1706 aaKnown RBP17.29■□□□□ 0.36
VARS-227ENST00000489979 PLXNB2O15031 1838 aa17.28■□□□□ 0.36
VARS-227ENST00000489979 MNX1P50219 401 aaPredicted RBP17.28■□□□□ 0.36
VARS-227ENST00000489979 MVPQ14764 893 aaKnown RBP17.28■□□□□ 0.36
VARS-227ENST00000489979 TBC1D2Q9BYX2 928 aa17.28■□□□□ 0.36
VARS-227ENST00000489979 NBPF3Q9H094 633 aa17.28■□□□□ 0.36
VARS-227ENST00000489979 HDAC5Q9UQL6 1122 aa17.28■□□□□ 0.36
VARS-227ENST00000489979 USP17L5A8MUK1 530 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 SYN1P17600 705 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 CAP2P40123 477 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 TFCP2Q12800 502 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 MEIS3Q99687 375 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 C11orf49Q9H6J7 331 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 NOB1Q9ULX3 412 aaKnown RBP17.27■□□□□ 0.36
VARS-227ENST00000489979 AKAP2Q9Y2D5 859 aa17.27■□□□□ 0.36
VARS-227ENST00000489979 COL2A1P02458 1487 aaPredicted RBP17.26■□□□□ 0.35
VARS-227ENST00000489979 MAP4K4O95819 1239 aaPredicted RBP17.26■□□□□ 0.35
VARS-227ENST00000489979 LDHCP07864 332 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 CYP2B6P20813 491 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 GSTO1P78417 241 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 SH3D19Q5HYK7 790 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 GPR153Q6NV75 609 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 PI16Q6UXB8 463 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 TBC1D9Q6ZT07 1266 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 TRIB2Q92519 343 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 NSUN4Q96CB9 384 aaKnown RBP17.26■□□□□ 0.35
VARS-227ENST00000489979 CDCA7LQ96GN5 454 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 NEUROD6Q96NK8 337 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 HMG20BQ9P0W2 317 aa17.26■□□□□ 0.35
VARS-227ENST00000489979 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.26■□□□□ 0.35
VARS-227ENST00000489979 MAGEA10P43363 369 aaPredicted RBP17.25■□□□□ 0.35
VARS-227ENST00000489979 Q7L0L9 218 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 TEX11Q8IYF3 940 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 DEFB123Q8N688 67 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 SPATA5Q8NB90 893 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 API5Q9BZZ5 524 aaKnown RBP17.25■□□□□ 0.35
VARS-227ENST00000489979 AS3MTQ9HBK9 375 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 RAI14Q9P0K7 980 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 MORF4L1Q9UBU8 362 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 OGDHLQ9ULD0 1010 aa17.25■□□□□ 0.35
VARS-227ENST00000489979 SRGAP3O43295 1099 aa17.24■□□□□ 0.35
VARS-227ENST00000489979 PEX10O60683 326 aa17.24■□□□□ 0.35
VARS-227ENST00000489979 IRX3P78415 501 aaPredicted RBP17.24■□□□□ 0.35
VARS-227ENST00000489979 CUL9Q8IWT3 2517 aa17.24■□□□□ 0.35
VARS-227ENST00000489979 PRKAR2AP13861 404 aaKnown RBP17.23■□□□□ 0.35
VARS-227ENST00000489979 MTMR2Q13614 643 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 LRIT3Q3SXY7 679 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 GORABQ5T7V8 394 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 MAP3K21Q5TCX8 1036 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 TDHQ8IZJ6 230 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 SH3RF3Q8TEJ3 882 aaPredicted RBP17.23■□□□□ 0.35
VARS-227ENST00000489979 P2RX7Q99572 595 aaKnown RBP17.23■□□□□ 0.35
VARS-227ENST00000489979 NUDT12Q9BQG2 462 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 WDR18Q9BV38 432 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 HERC5Q9UII4 1024 aaKnown RBP17.23■□□□□ 0.35
VARS-227ENST00000489979 SIPA1L1O43166 1804 aa17.23■□□□□ 0.35
VARS-227ENST00000489979 PFASO15067 1338 aa17.22■□□□□ 0.35
VARS-227ENST00000489979 BACE1P56817 501 aa17.22■□□□□ 0.35
VARS-227ENST00000489979 UBE2OQ9C0C9 1292 aaKnown RBP17.22■□□□□ 0.35
VARS-227ENST00000489979 TXNRD2Q9NNW7 524 aa17.22■□□□□ 0.35
VARS-227ENST00000489979 TMOD4Q9NZQ9 345 aa17.22■□□□□ 0.35
VARS-227ENST00000489979 PI4KBQ9UBF8 816 aa17.22■□□□□ 0.35
VARS-227ENST00000489979 ZNF316A6NFI3 1004 aaPredicted RBP17.21■□□□□ 0.35
VARS-227ENST00000489979 ARID4AP29374 1257 aaPredicted RBP17.21■□□□□ 0.35
VARS-227ENST00000489979 HOXA7P31268 230 aaPredicted RBP17.21■□□□□ 0.35
VARS-227ENST00000489979 HERVK_113P62684 666 aa17.21■□□□□ 0.35
VARS-227ENST00000489979 JAG1P78504 1218 aa17.21■□□□□ 0.35
VARS-227ENST00000489979 GPRC5AQ8NFJ5 357 aa17.21■□□□□ 0.35
VARS-227ENST00000489979 SOCS4Q8WXH5 440 aa17.21■□□□□ 0.35
VARS-227ENST00000489979 ASNSP08243 561 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 XRCC5P13010 732 aaKnown RBP17.2■□□□□ 0.34
VARS-227ENST00000489979 ZKSCAN1P17029 563 aaPredicted RBP17.2■□□□□ 0.34
VARS-227ENST00000489979 MCAMP43121 646 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 CACNB2Q08289 660 aaPredicted RBP17.2■□□□□ 0.34
VARS-227ENST00000489979 MTX1Q13505 466 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 TRMT2AQ8IZ69 625 aaKnown RBP17.2■□□□□ 0.34
VARS-227ENST00000489979 NOL10Q9BSC4 688 aaKnown RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms