RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PPIP5K2O43314 1243 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 MCM3P25205 808 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 PLS1Q14651 629 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 GPCPD1Q9NPB8 672 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 HLFQ16534 295 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 SPECC1Q5M775 1068 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 RGS12O14924 1447 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 MYO3AQ8NEV4 1616 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 GNG11P61952 73 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 TFAP4Q01664 338 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 SMARCC2Q8TAQ2 1214 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 CNKSR1Q969H4 720 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 ELP1O95163 1332 aa12.48□□□□□ -0.41
HDAC6-228ENST00000486227 DESP17661 470 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 LETM2Q2VYF4 491 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 PIK3AP1Q6ZUJ8 805 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 IQUBQ8NA54 791 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 ATG3Q9NT62 314 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 OVOS2A0A0J9YW53 1432 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 OVOS2Q6IE36 1432 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 PFKFB2O60825 505 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 MTX1Q13505 466 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 UBE3CQ15386 1083 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 CERS3Q8IU89 383 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 TMEM87AQ8NBN3 555 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 CLSTN2Q9H4D0 955 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 IFNKQ9P0W0 207 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 ADGRB1O14514 1584 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 SHTN1A0MZ66 631 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 CTR9Q6PD62 1173 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 C2CD5Q86YS7 1000 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 CMTR1Q8N1G2 835 aaKnown RBP12.47□□□□□ -0.41
HDAC6-228ENST00000486227 TBC1D22AQ8WUA7 517 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 LRRC27Q9C0I9 530 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 PICK1Q9NRD5 415 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 PSMA7O14818 248 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 GTF2IP78347 998 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 DPY19L2Q6NUT2 758 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF654Q8IZM8 581 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 TTLL11Q8NHH1 800 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 ERMNQ8TAM6 284 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 KCNH3Q9ULD8 1083 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 THRAP3Q9Y2W1 955 aaKnown RBP12.47□□□□□ -0.41
HDAC6-228ENST00000486227 CRB1P82279 1406 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 TNS3Q68CZ2 1445 aa12.47□□□□□ -0.41
HDAC6-228ENST00000486227 ERVV-1B6SEH8 477 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 H7C1D1 291 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 MFSD14BQ5SR56 506 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 KRT79Q5XKE5 535 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 FAM114A1Q8IWE2 563 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 C1orf167Q5SNV9 1468 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 SYNE4Q8N205 404 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 VTI1AQ96AJ9 217 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 ADCY9O60503 1353 aa12.46□□□□□ -0.41
HDAC6-228ENST00000486227 ZNF75DP51815 510 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 SPAG1Q07617 926 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 UBE4AQ14139 1066 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 TAF4BQ92750 862 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 OSBP2Q969R2 916 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 SPDYE3A6NKU9 549 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 DNA2P51530 1060 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 FAM193AP78312 1265 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 ERFEQ4G0M1 354 aa12.46□□□□□ -0.42
HDAC6-228ENST00000486227 TBCAO75347 108 aaKnown RBP12.45□□□□□ -0.42
HDAC6-228ENST00000486227 LIG1P18858 919 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 PDIA3P30101 505 aaKnown RBP12.45□□□□□ -0.42
HDAC6-228ENST00000486227 VPS54Q9P1Q0 977 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 M0R2C6 588 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 GTF2A1P52655 376 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-228ENST00000486227 MYSM1Q5VVJ2 828 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 SUSD4Q5VX71 490 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 USP28Q96RU2 1077 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 ZNF202O95125 648 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 POTEJP0CG39 1038 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 SCRN1Q12765 414 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 DLGAP5Q15398 846 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 RASSF4Q9H2L5 321 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 POLR2DO15514 142 aaKnown RBP12.45□□□□□ -0.42
HDAC6-228ENST00000486227 TCP10Q12799 353 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 PPP2R5BQ15173 497 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 STXBP4Q6ZWJ1 553 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.45□□□□□ -0.42
HDAC6-228ENST00000486227 MYO6Q9UM54 1294 aa12.45□□□□□ -0.42
HDAC6-228ENST00000486227 PTPRUQ92729 1446 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 AFF2P51816 1311 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 GOLGA6L10A6NI86 522 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 CUL4AQ13619 759 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 ARHGAP27Q6ZUM4 889 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 CERKQ8TCT0 537 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 CTAGE1Q96RT6 745 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 USO1O60763 962 aaKnown RBP12.44□□□□□ -0.42
HDAC6-228ENST00000486227 IRX3P78415 501 aaPredicted RBP12.44□□□□□ -0.42
HDAC6-228ENST00000486227 SYT10Q6XYQ8 523 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 SYCP3Q8IZU3 236 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 PDLIM2Q96JY6 352 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 BEGAINQ9BUH8 593 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 PUS7LQ9H0K6 701 aaKnown RBP12.44□□□□□ -0.42
HDAC6-228ENST00000486227 IQGAP1P46940 1657 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 ZNF804BA4D1E1 1349 aa12.44□□□□□ -0.42
HDAC6-228ENST00000486227 TNKSO95271 1327 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms