RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 TRIM56Q9BRZ2 755 aaKnown RBP6.74□□□□□ -1.33
VPS13A-211ENST00000484581 HIRIP3Q9BW71 556 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-211ENST00000484581 BCO2Q9BYV7 579 aa6.74□□□□□ -1.33
VPS13A-211ENST00000484581 ZC3H7BQ9UGR2 993 aaKnown RBP6.74□□□□□ -1.33
VPS13A-211ENST00000484581 GADD45BO75293 160 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-211ENST00000484581 SLFN14P0C7P3 912 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 ITPKAP23677 461 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 HNRNPUQ00839 825 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS13A-211ENST00000484581 CYP27C1Q4G0S4 372 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 OGFOD2Q6N063 350 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 CBLL1Q75N03 491 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 MCF2L2Q86YR7 1114 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 SLC5A6Q9Y289 635 aa6.73□□□□□ -1.33
VPS13A-211ENST00000484581 TMA7Q9Y2S6 64 aaKnown RBP6.73□□□□□ -1.33
VPS13A-211ENST00000484581 JUNBP17275 347 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-211ENST00000484581 NCLP19338 710 aaKnown RBP6.72□□□□□ -1.33
VPS13A-211ENST00000484581 GSTT1P30711 240 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 PAK2Q13177 524 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 CCDC144BQ3MJ40 725 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 NXPE4Q6UWF7 544 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 NFXL1Q6ZNB6 911 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 RASGRP4Q8TDF6 673 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 GPRASP2Q96D09 838 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 WDR18Q9BV38 432 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 NOC4LQ9BVI4 516 aaKnown RBP6.72□□□□□ -1.33
VPS13A-211ENST00000484581 GSX1Q9H4S2 264 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-211ENST00000484581 PIDD1Q9HB75 910 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 PAK6Q9NQU5 681 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-211ENST00000484581 C1GALT1Q9NS00 363 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 PPP1R9AQ9ULJ8 1098 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 SYNGAP1Q96PV0 1343 aa6.72□□□□□ -1.33
VPS13A-211ENST00000484581 STK10O94804 968 aaKnown RBP6.71□□□□□ -1.34
VPS13A-211ENST00000484581 ATF4P18848 351 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-211ENST00000484581 ZNF157P51786 506 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-211ENST00000484581 RPS26P11Q5JNZ5 115 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-211ENST00000484581 SEZ6L2Q6UXD5 910 aa6.71□□□□□ -1.34
VPS13A-211ENST00000484581 STK11IPQ8N1F8 1099 aa6.71□□□□□ -1.34
VPS13A-211ENST00000484581 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.71□□□□□ -1.341e-9■□□□□ 10.1
VPS13A-211ENST00000484581 ZC3H12CQ9C0D7 883 aaKnown RBP6.71□□□□□ -1.34
VPS13A-211ENST00000484581 PPP4R2Q9NY27 417 aa6.71□□□□□ -1.34
VPS13A-211ENST00000484581 TRAK1Q9UPV9 953 aa6.71□□□□□ -1.34
VPS13A-211ENST00000484581 TMEM238LA0A1B0GVL6 79 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 DYNC1LI2O43237 492 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-211ENST00000484581 LIG1P18858 919 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 GRM2Q14416 872 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 PMFBP1Q8TBY8 1022 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 ANKRD24Q8TF21 1146 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 BCL7CQ8WUZ0 217 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-211ENST00000484581 OSBPL2Q9H1P3 480 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 ATXN3LQ9H3M9 355 aa6.7□□□□□ -1.34
VPS13A-211ENST00000484581 C8AP07357 584 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 ITGB5P18084 799 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 ID3Q02535 119 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 PWP1Q13610 501 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 PLCL1Q15111 1095 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 LCE4AQ5TA78 99 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 RSRP1Q9BUV0 290 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 ABCB6Q9NP58 842 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 COPRSQ9NQ92 184 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 KBTBD4Q9NVX7 518 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 PPM1HQ9ULR3 514 aa6.69□□□□□ -1.34
VPS13A-211ENST00000484581 TTF2Q9UNY4 1162 aaKnown RBP6.69□□□□□ -1.34
VPS13A-211ENST00000484581 TLDC2A0PJX2 215 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 BIN1O00499 593 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 RNGTTO60942 597 aaKnown RBP6.68□□□□□ -1.34
VPS13A-211ENST00000484581 PPP2R3AQ06190 1150 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 PRPF40BQ6NWY9 871 aaKnown RBP6.68□□□□□ -1.34
VPS13A-211ENST00000484581 POU5F2Q8N7G0 328 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 C3orf58Q8NDZ4 430 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 GLIS3Q8NEA6 775 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 MISP3Q96FF7 219 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 PIF1Q9H611 641 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 CCDC86Q9H6F5 360 aaKnown RBP6.68□□□□□ -1.34
VPS13A-211ENST00000484581 CRIM1Q9NZV1 1036 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 TBX22Q9Y458 520 aa6.68□□□□□ -1.34
VPS13A-211ENST00000484581 ANKRD62A6NC57 917 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 PPM1GO15355 546 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-211ENST00000484581 TMPRSS2O15393 492 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 FAM87AP0C7U9 286 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 XRCC5P13010 732 aaKnown RBP6.67□□□□□ -1.34
VPS13A-211ENST00000484581 CDK5R2Q13319 367 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 NBPF6Q5VWK0 638 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 DTHD1Q6ZMT9 781 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 KIAA0825Q8IV33 1275 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 SMYD4Q8IYR2 804 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-211ENST00000484581 WDR89Q96FK6 387 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-211ENST00000484581 SEC16BQ96JE7 1060 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 NBPF4Q96M43 638 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 SPON2Q9BUD6 331 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 ZSWIM4Q9H7M6 989 aa6.67□□□□□ -1.34
VPS13A-211ENST00000484581 GSTP1P09211 210 aaKnown RBP6.66□□□□□ -1.34
VPS13A-211ENST00000484581 FAAP100Q0VG06 881 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 BNIP3Q12983 259 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 ZNF792Q3KQV3 632 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 ZNF574Q6ZN55 896 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-211ENST00000484581 ARHGAP27Q6ZUM4 889 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 NETO1Q8TDF5 533 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 FANCD2OSQ96PS1 177 aa6.66□□□□□ -1.34
VPS13A-211ENST00000484581 ZNF862O60290 1169 aa6.65□□□□□ -1.34
VPS13A-211ENST00000484581 RLBP1P12271 317 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms