RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 WRNIP1Q96S55 665 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 DIAPH3Q9NSV4 1193 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 HERC5Q9UII4 1024 aaKnown RBP14.33□□□□□ -0.12
VPS13D-204ENST00000469054 PAPPA2Q9BXP8 1791 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 PHF20L1A8MW92 1017 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 PATL2C9JE40 543 aaKnown RBP14.32□□□□□ -0.12
VPS13D-204ENST00000469054 APPP05067 770 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 ECE1P42892 770 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 PLCD1P51178 756 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 ZNF157P51786 506 aaPredicted RBP14.32□□□□□ -0.12
VPS13D-204ENST00000469054 BMP2KLQ5H9B9 411 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 CYP4F22Q6NT55 531 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 CWC27Q6UX04 472 aaKnown RBP14.32□□□□□ -0.12
VPS13D-204ENST00000469054 CCDC129Q6ZRS4 1044 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 CCDC102AQ96A19 550 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 SLC10A4Q96EP9 437 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 CLMNQ96JQ2 1002 aa14.32□□□□□ -0.12
VPS13D-204ENST00000469054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS13D-204ENST00000469054 TRPM7Q96QT4 1865 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 FAM196BA6NMK8 535 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 USP17L12C9JPN9 530 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 USP17L21D6R901 530 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 INPP5BP32019 993 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 VEGFBP49765 207 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 IFNL3Q8IZI9 196 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 CRACR2BQ8N4Y2 399 aaPredicted RBP14.31□□□□□ -0.12
VPS13D-204ENST00000469054 ZKSCAN4Q969J2 545 aaPredicted RBP14.31□□□□□ -0.12
VPS13D-204ENST00000469054 CAPNS2Q96L46 248 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 NACAP1Q9BZK3 213 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 EHD4Q9H223 541 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 SERPINB13Q9UIV8 391 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 CSADQ9Y600 493 aa14.31□□□□□ -0.12
VPS13D-204ENST00000469054 ABCB7O75027 752 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 CYP2D6P10635 497 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 CHMLP26374 656 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 GRM1Q13255 1194 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 VGLL4Q14135 290 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 SBK1Q52WX2 424 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 C12orf60Q5U649 245 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 CTR9Q6PD62 1173 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 ZNF589Q86UQ0 364 aaPredicted RBP14.3□□□□□ -0.12
VPS13D-204ENST00000469054 RASAL3Q86YV0 1011 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 AMOTL1Q8IY63 956 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 TRIM34Q9BYJ4 488 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 DNAJC18Q9H819 358 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 EPB41L4AQ9HCS5 686 aaPredicted RBP14.3□□□□□ -0.12
VPS13D-204ENST00000469054 ARPP21Q9UBL0 812 aaPredicted RBP14.3□□□□□ -0.12
VPS13D-204ENST00000469054 CCDC171Q6TFL3 1326 aa14.3□□□□□ -0.12
VPS13D-204ENST00000469054 WDR33Q9C0J8 1336 aaKnown RBP14.3□□□□□ -0.12
VPS13D-204ENST00000469054 FAM155AB1AL88 458 aaPredicted RBP14.29□□□□□ -0.12
VPS13D-204ENST00000469054 FOXP2O15409 715 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 CTNND1O60716 968 aaKnown RBP14.29□□□□□ -0.12
VPS13D-204ENST00000469054 SLC10A3P09131 477 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 TDO2P48775 406 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 MFAP1P55081 439 aaKnown RBP14.29□□□□□ -0.12
VPS13D-204ENST00000469054 GABPAQ06546 454 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 NOL9Q5SY16 702 aaKnown RBP14.29□□□□□ -0.12
VPS13D-204ENST00000469054 VPS53Q5VIR6 699 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 ELP3Q9H9T3 547 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.29□□□□□ -0.12
VPS13D-204ENST00000469054 SNCAIPQ9Y6H5 919 aa14.29□□□□□ -0.12
VPS13D-204ENST00000469054 CYP2D7A0A087X1C5 515 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 HSPD1P10809 573 aaKnown RBP14.28□□□□□ -0.12
VPS13D-204ENST00000469054 EVX2Q03828 476 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 NOGQ13253 232 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 RRP1BQ14684 758 aaKnown RBP14.28□□□□□ -0.12
VPS13D-204ENST00000469054 SCYL3Q8IZE3 742 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 RUFY2Q8WXA3 655 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 NAPBQ9H115 298 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 TAOK2Q9UL54 1235 aa14.28□□□□□ -0.12
VPS13D-204ENST00000469054 RAD50Q92878 1312 aa14.27□□□□□ -0.12
VPS13D-204ENST00000469054 MINDY4BA8MYZ0 360 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 AOC2O75106 756 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 MAP2K2P36507 400 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 CAP2P40123 477 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 ALX1Q15699 326 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 SPRYD7Q5W111 196 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 TATDN1Q6P1N9 297 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 ERO1BQ86YB8 467 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 OPTNQ96CV9 577 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 DYNLL2Q96FJ2 89 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 WNK4Q96J92 1243 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 IL25Q9H293 177 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 MYH7P12883 1935 aa14.27□□□□□ -0.13
VPS13D-204ENST00000469054 SPDYE5A6NIY4 337 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 SMIM22K7EJ46 135 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 FGAP02671 866 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 ZBTB48P10074 688 aaPredicted RBP14.26□□□□□ -0.13
VPS13D-204ENST00000469054 SHMT1P34896 483 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 GJA5P36382 358 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 PPATQ06203 517 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 MKRN3Q13064 507 aaKnown RBP14.26□□□□□ -0.13
VPS13D-204ENST00000469054 SLC44A5Q8NCS7 719 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 ZIC5Q96T25 663 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 PICK1Q9NRD5 415 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 SWAP70Q9UH65 585 aa14.26□□□□□ -0.13
VPS13D-204ENST00000469054 SGSM2O43147 1006 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 PTPRAP18433 802 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 CDK8P49336 464 aa14.25□□□□□ -0.13
VPS13D-204ENST00000469054 KIF23Q02241 960 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms