RNA–Protein interactions for RNA: ENST00000467378.1

USP11-205, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-205ENST00000467378 CCDC136Q96JN2 1154 aa23.18■■□□□ 1.3
USP11-205ENST00000467378 TEPSINQ96N21 525 aa23.18■■□□□ 1.3
USP11-205ENST00000467378 NR2E3Q9Y5X4 410 aa23.18■■□□□ 1.3
USP11-205ENST00000467378 GLRX3O76003 335 aaKnown RBP23.17■■□□□ 1.3
USP11-205ENST00000467378 CETPP11597 493 aa23.17■■□□□ 1.3
USP11-205ENST00000467378 PDE4AP27815 886 aa23.17■■□□□ 1.3
USP11-205ENST00000467378 SLF2Q8IX21 1173 aa23.17■■□□□ 1.3
USP11-205ENST00000467378 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.17■■□□□ 1.3
USP11-205ENST00000467378 IDH1O75874 414 aaKnown RBP23.16■■□□□ 1.3
USP11-205ENST00000467378 LDHCP07864 332 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 TNNI2P48788 182 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 GSTO1P78417 241 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 TMEM39BQ9GZU3 492 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 PRO3102Q9H379 93 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 OSBPL3Q9H4L5 887 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 PPP4R2Q9NY27 417 aa23.16■■□□□ 1.3
USP11-205ENST00000467378 MROH7-TTC4A0A0A0MT08 1334 aa23.15■■□□□ 1.3
USP11-205ENST00000467378 SPDYE5A6NIY4 337 aa23.15■■□□□ 1.3
USP11-205ENST00000467378 BTBD19C9JJ37 291 aa23.15■■□□□ 1.3
USP11-205ENST00000467378 MAP3K12Q12852 859 aa23.15■■□□□ 1.3
USP11-205ENST00000467378 NAA16Q6N069 864 aaPredicted RBP23.15■■□□□ 1.3
USP11-205ENST00000467378 RAET1EQ8TD07 263 aa23.15■■□□□ 1.3
USP11-205ENST00000467378 MGAMO43451 1857 aa23.14■■□□□ 1.29
USP11-205ENST00000467378 GPR75-ASB3A0A0A6YYF3 556 aa23.14■■□□□ 1.29
USP11-205ENST00000467378 GRK4P32298 578 aa23.14■■□□□ 1.29
USP11-205ENST00000467378 GJA8P48165 433 aa23.14■■□□□ 1.29
USP11-205ENST00000467378 ZCCHC17Q9NP64 241 aaKnown RBP23.14■■□□□ 1.29
USP11-205ENST00000467378 SRRDQ9UH36 339 aa23.14■■□□□ 1.29
USP11-205ENST00000467378 CDK5RAP2Q96SN8 1893 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 MAP4K4O95819 1239 aaPredicted RBP23.13■■□□□ 1.29
USP11-205ENST00000467378 CCL5P13501 91 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 HOXD10P28358 340 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 PSMC4P43686 418 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 ADGRA1Q86SQ6 560 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 ERO1BQ86YB8 467 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 BIN2Q9UBW5 565 aaPredicted RBP23.13■■□□□ 1.29
USP11-205ENST00000467378 CPA4Q9UI42 421 aa23.13■■□□□ 1.29
USP11-205ENST00000467378 CUL9Q8IWT3 2517 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 GJB1P08034 283 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 SNAPC2Q13487 334 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 CDC42EP5Q6NZY7 148 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 TMED8Q6PL24 325 aaPredicted RBP23.12■■□□□ 1.29
USP11-205ENST00000467378 MAGEB6Q8N7X4 407 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 RNF208Q9H0X6 261 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 SNCAIPQ9Y6H5 919 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 AK9Q5TCS8 1911 aa23.12■■□□□ 1.29
USP11-205ENST00000467378 RANBP2P49792 3224 aaKnown RBP23.11■■□□□ 1.29
USP11-205ENST00000467378 SOX1O00570 391 aaPredicted RBP23.11■■□□□ 1.29
USP11-205ENST00000467378 FMNL1O95466 1100 aaPredicted RBP23.11■■□□□ 1.29
USP11-205ENST00000467378 OSBPP22059 807 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 CYP7A1P22680 504 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 CTGFP29279 349 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 BTDP43251 543 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 SLC9C2Q5TAH2 1124 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 UBE2Q1Q7Z7E8 422 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 KBTBD3Q8NAB2 608 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 TRIM47Q96LD4 638 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 USP40Q9NVE5 1235 aa23.11■■□□□ 1.29
USP11-205ENST00000467378 MYPNQ86TC9 1320 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 A0A1W2PPC1 479 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 TCRBV5S4A2TA0A5A2 114 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 IRF6O14896 467 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 PDE6AP16499 860 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 UBXN2AP68543 259 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 C17orf99Q6UX52 265 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 ZKSCAN4Q969J2 545 aaPredicted RBP23.1■■□□□ 1.29
USP11-205ENST00000467378 LRCH3Q96II8 777 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 WRNIP1Q96S55 665 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 FOCADQ5VW36 1801 aa23.1■■□□□ 1.29
USP11-205ENST00000467378 FARP2O94887 1054 aaPredicted RBP23.09■■□□□ 1.29
USP11-205ENST00000467378 ADD2P35612 726 aa23.09■■□□□ 1.29
USP11-205ENST00000467378 RHBDL3P58872 404 aa23.09■■□□□ 1.29
USP11-205ENST00000467378 PPP4CP60510 307 aa23.09■■□□□ 1.29
USP11-205ENST00000467378 PPIL2Q13356 520 aa23.09■■□□□ 1.29
USP11-205ENST00000467378 ZNF532Q9HCE3 1301 aa23.08■■□□□ 1.29
USP11-205ENST00000467378 MNX1P50219 401 aaPredicted RBP23.08■■□□□ 1.29
USP11-205ENST00000467378 CACNB3P54284 484 aa23.08■■□□□ 1.29
USP11-205ENST00000467378 FKBP1CQ5VVH2 108 aa23.08■■□□□ 1.29
USP11-205ENST00000467378 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.08■■□□□ 1.29
USP11-205ENST00000467378 EVI5O60447 810 aa23.07■■□□□ 1.28
USP11-205ENST00000467378 CHGBP05060 677 aa23.07■■□□□ 1.28
USP11-205ENST00000467378 SLFNL1Q499Z3 407 aa23.07■■□□□ 1.28
USP11-205ENST00000467378 ZSCAN25Q6NSZ9 544 aa23.07■■□□□ 1.28
USP11-205ENST00000467378 U2AF1L4Q8WU68 220 aaKnown RBP23.07■■□□□ 1.28
USP11-205ENST00000467378 AATFQ9NY61 560 aaKnown RBP eCLIP23.07■■□□□ 1.28
USP11-205ENST00000467378 TMOD2Q9NZR1 351 aa23.07■■□□□ 1.28
USP11-205ENST00000467378 ALPK3Q96L96 1907 aa23.06■■□□□ 1.28
USP11-205ENST00000467378 BAG3O95817 575 aa23.06■■□□□ 1.28
USP11-205ENST00000467378 DYNLL1P63167 89 aaKnown RBP23.06■■□□□ 1.28
USP11-205ENST00000467378 UBE3CQ15386 1083 aa23.06■■□□□ 1.28
USP11-205ENST00000467378 EVI5LQ96CN4 794 aa23.06■■□□□ 1.28
USP11-205ENST00000467378 NOL10Q9BSC4 688 aaKnown RBP23.06■■□□□ 1.28
USP11-205ENST00000467378 IDI2Q9BXS1 227 aa23.06■■□□□ 1.28
USP11-205ENST00000467378 RFX7Q2KHR2 1363 aa23.05■■□□□ 1.28
USP11-205ENST00000467378 NFIAQ12857 509 aa23.05■■□□□ 1.28
USP11-205ENST00000467378 FAM83AQ86UY5 434 aa23.05■■□□□ 1.28
USP11-205ENST00000467378 MIGA1Q8NAN2 632 aa23.05■■□□□ 1.28
USP11-205ENST00000467378 SH3RF3Q8TEJ3 882 aaPredicted RBP23.05■■□□□ 1.28
USP11-205ENST00000467378 FAM198AQ9UFP1 575 aa23.05■■□□□ 1.28
USP11-205ENST00000467378 PDHXO00330 501 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms