RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 EFCC1Q9HA90 598 aa23.64■■□□□ 1.37
USP40-207ENST00000450940 PI4KBQ9UBF8 816 aa23.64■■□□□ 1.37
USP40-207ENST00000450940 PTPN22Q9Y2R2 807 aa23.64■■□□□ 1.37
USP40-207ENST00000450940 PDHXO00330 501 aa23.63■■□□□ 1.37
USP40-207ENST00000450940 MAP3K12Q12852 859 aa23.63■■□□□ 1.37
USP40-207ENST00000450940 C17orf99Q6UX52 265 aa23.63■■□□□ 1.37
USP40-207ENST00000450940 FLT1P17948 1338 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 ADGRA2Q96PE1 1338 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 FAM196BA6NMK8 535 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 APBB1O00213 710 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 IFIT2P09913 472 aaKnown RBP23.62■■□□□ 1.37
USP40-207ENST00000450940 MLLT1Q03111 559 aaPredicted RBP23.62■■□□□ 1.37
USP40-207ENST00000450940 ARHGEF6Q15052 776 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 TTF1Q15361 905 aaPredicted RBP23.62■■□□□ 1.37
USP40-207ENST00000450940 FASTKD5Q7L8L6 764 aaKnown RBP23.62■■□□□ 1.37
USP40-207ENST00000450940 MAGEB6Q8N7X4 407 aa23.62■■□□□ 1.37
USP40-207ENST00000450940 MYH1P12882 1939 aa23.61■■□□□ 1.37
USP40-207ENST00000450940 CAP2P40123 477 aa23.61■■□□□ 1.37
USP40-207ENST00000450940 DYNLL1P63167 89 aaKnown RBP23.61■■□□□ 1.37
USP40-207ENST00000450940 FOXP4Q8IVH2 680 aaPredicted RBP23.61■■□□□ 1.37
USP40-207ENST00000450940 MAPKAPK5Q8IW41 473 aa23.61■■□□□ 1.37
USP40-207ENST00000450940 RRP1BQ14684 758 aaKnown RBP23.6■■□□□ 1.37
USP40-207ENST00000450940 TBC1D2Q9BYX2 928 aa23.6■■□□□ 1.37
USP40-207ENST00000450940 SLC45A1Q9Y2W3 748 aa23.6■■□□□ 1.37
USP40-207ENST00000450940 SOX10P56693 466 aa23.59■■□□□ 1.37
USP40-207ENST00000450940 LACTBP83111 547 aaPredicted RBP23.59■■□□□ 1.37
USP40-207ENST00000450940 TNRC18O15417 2968 aaPredicted RBP23.59■■□□□ 1.37
USP40-207ENST00000450940 MIGA1Q8NAN2 632 aa23.58■■□□□ 1.37
USP40-207ENST00000450940 DNAJC18Q9H819 358 aa23.58■■□□□ 1.37
USP40-207ENST00000450940 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.58■■□□□ 1.37
USP40-207ENST00000450940 PALD1Q9ULE6 856 aa23.58■■□□□ 1.37
USP40-207ENST00000450940 ZSWIM8A7E2V4 1837 aa23.58■■□□□ 1.37
USP40-207ENST00000450940 GNRH1P01148 92 aa23.57■■□□□ 1.36
USP40-207ENST00000450940 ATP5JP18859 108 aa23.57■■□□□ 1.36
USP40-207ENST00000450940 PARK7Q99497 189 aaKnown RBP23.57■■□□□ 1.36
USP40-207ENST00000450940 RIOK1Q9BRS2 568 aaKnown RBP23.57■■□□□ 1.36
USP40-207ENST00000450940 LRRCC1Q9C099 1032 aa23.57■■□□□ 1.36
USP40-207ENST00000450940 LOC285556D6RIA3 1793 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 TRIM75PA6NK02 468 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 PDE6AP16499 860 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 KIF22Q14807 665 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 CCDC84Q86UT8 332 aaPredicted RBP23.56■■□□□ 1.36
USP40-207ENST00000450940 ARMC5Q96C12 935 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 DCTPP1Q9H773 170 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 CPA4Q9UI42 421 aa23.56■■□□□ 1.36
USP40-207ENST00000450940 USP17L5A8MUK1 530 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 GOLIM4O00461 696 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 BCRP11274 1271 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 SLC9C2Q5TAH2 1124 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 GADL1Q6ZQY3 521 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 ZNF280CQ8ND82 737 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 ARHGAP39Q9C0H5 1083 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 GINM1Q9NU53 330 aa23.55■■□□□ 1.36
USP40-207ENST00000450940 TCRBV5S4A2TA0A5A2 114 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 HLA-DOAP06340 250 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 CYP2C8P10632 490 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 SPP2Q13103 211 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 PROCA1Q8NCQ7 364 aaPredicted RBP23.54■■□□□ 1.36
USP40-207ENST00000450940 DNAJC2Q99543 621 aaKnown RBP23.54■■□□□ 1.36
USP40-207ENST00000450940 HAUS7Q99871 368 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 WDR18Q9BV38 432 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 SAP30BPQ9UHR5 308 aaKnown RBP23.54■■□□□ 1.36
USP40-207ENST00000450940 AGTPBP1Q9UPW5 1226 aa23.54■■□□□ 1.36
USP40-207ENST00000450940 RBBP6Q7Z6E9 1792 aaKnown RBP23.54■■□□□ 1.36
USP40-207ENST00000450940 MGAMO43451 1857 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 DDX60LQ5H9U9 1706 aaKnown RBP23.53■■□□□ 1.36
USP40-207ENST00000450940 ASNSP08243 561 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 USP5P45974 858 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 PRMT2P55345 433 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 JAG1P78504 1218 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 SH3D19Q5HYK7 790 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 CRACR2BQ8N4Y2 399 aaPredicted RBP23.53■■□□□ 1.36
USP40-207ENST00000450940 EHD4Q9H223 541 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 PAG1Q9NWQ8 432 aa23.53■■□□□ 1.36
USP40-207ENST00000450940 MAGEB6P1A0A0J9YX57 407 aa23.52■■□□□ 1.36
USP40-207ENST00000450940 CTGFP29279 349 aa23.52■■□□□ 1.36
USP40-207ENST00000450940 EDC3Q96F86 508 aaKnown RBP23.52■■□□□ 1.36
USP40-207ENST00000450940 BOLA2Q9H3K6 86 aa23.52■■□□□ 1.36
USP40-207ENST00000450940 MYH7P12883 1935 aa23.52■■□□□ 1.36
USP40-207ENST00000450940 ZNF532Q9HCE3 1301 aa23.52■■□□□ 1.36
USP40-207ENST00000450940 TATDN1Q6P1N9 297 aa23.51■■□□□ 1.35
USP40-207ENST00000450940 TRIM47Q96LD4 638 aa23.51■■□□□ 1.35
USP40-207ENST00000450940 AS3MTQ9HBK9 375 aa23.51■■□□□ 1.35
USP40-207ENST00000450940 PTCH2Q9Y6C5 1203 aa23.51■■□□□ 1.35
USP40-207ENST00000450940 CENPFP49454 3210 aa23.51■■□□□ 1.35
USP40-207ENST00000450940 SMARCA5O60264 1052 aaPredicted RBP23.5■■□□□ 1.35
USP40-207ENST00000450940 PSMC4P43686 418 aa23.5■■□□□ 1.35
USP40-207ENST00000450940 RRP1P56182 461 aaKnown RBP23.5■■□□□ 1.35
USP40-207ENST00000450940 TREML2Q5T2D2 321 aa23.5■■□□□ 1.35
USP40-207ENST00000450940 TTC6Q86TZ1 520 aa23.5■■□□□ 1.35
USP40-207ENST00000450940 TRIM34Q9BYJ4 488 aa23.5■■□□□ 1.35
USP40-207ENST00000450940 SERPINB13Q9UIV8 391 aa23.5■■□□□ 1.35
USP40-207ENST00000450940 NAV1Q8NEY1 1877 aa23.49■■□□□ 1.35
USP40-207ENST00000450940 ADD2P35612 726 aa23.49■■□□□ 1.35
USP40-207ENST00000450940 CRNKL1Q9BZJ0 848 aaKnown RBP23.49■■□□□ 1.35
USP40-207ENST00000450940 BCL11AQ9H165 835 aa23.49■■□□□ 1.35
USP40-207ENST00000450940 PCDHB15Q9Y5E8 787 aa23.49■■□□□ 1.35
USP40-207ENST00000450940 HMGCS2P54868 508 aa23.48■■□□□ 1.35
USP40-207ENST00000450940 BACE1P56817 501 aa23.48■■□□□ 1.35
USP40-207ENST00000450940 ZNF333Q96JL9 665 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms