RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 DIXDC1Q155Q3 683 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 GRIK5Q16478 980 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 BRAPQ7Z569 592 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 ZNF654Q8IZM8 581 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 ALG1Q9BT22 464 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 PANK2Q9BZ23 570 aa29.35■■■□□ 2.29
SHOX2-201ENST00000389589 MKRN1Q9UHC7 482 aaKnown RBP29.35■■■□□ 2.29
SHOX2-201ENST00000389589 SMIM22K7EJ46 135 aa29.34■■■□□ 2.29
SHOX2-201ENST00000389589 SSRP1Q08945 709 aaKnown RBP29.34■■■□□ 2.29
SHOX2-201ENST00000389589 WASF1Q92558 559 aa29.34■■■□□ 2.29
SHOX2-201ENST00000389589 MCM9Q9NXL9 1143 aa29.34■■■□□ 2.29
SHOX2-201ENST00000389589 MFSD14BQ5SR56 506 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 MSL1Q68DK7 614 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 SH3RF3Q8TEJ3 882 aaPredicted RBP29.33■■■□□ 2.29
SHOX2-201ENST00000389589 RCOR1Q9UKL0 485 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 FMNL1O95466 1100 aaPredicted RBP29.33■■■□□ 2.29
SHOX2-201ENST00000389589 NASPP49321 788 aaPredicted RBP29.33■■■□□ 2.29
SHOX2-201ENST00000389589 SLC15A2Q16348 729 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 TPRNQ4KMQ1 711 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 AMOTL1Q8IY63 956 aa29.33■■■□□ 2.29
SHOX2-201ENST00000389589 RTFDC1Q9BY42 306 aaPredicted RBP29.33■■■□□ 2.29
SHOX2-201ENST00000389589 MYH6P13533 1939 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 ILDR1Q86SU0 546 aaPredicted RBP29.32■■■□□ 2.28
SHOX2-201ENST00000389589 ENAHQ8N8S7 591 aaPredicted RBP29.32■■■□□ 2.28
SHOX2-201ENST00000389589 PHKBQ93100 1093 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 FAM163AQ96GL9 167 aaPredicted RBP29.32■■■□□ 2.28
SHOX2-201ENST00000389589 CAMKK2Q96RR4 588 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 ZC3H12CQ9C0D7 883 aaKnown RBP29.32■■■□□ 2.28
SHOX2-201ENST00000389589 PLCG2P16885 1265 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 OTUD7BQ6GQQ9 843 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 FANCBQ8NB91 859 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 TSPY26PQ9H489 355 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 STK32BQ9NY57 414 aa29.32■■■□□ 2.28
SHOX2-201ENST00000389589 GPR75-ASB3A0A0A6YYF3 556 aa29.31■■■□□ 2.28
SHOX2-201ENST00000389589 PRDM1O75626 825 aa29.31■■■□□ 2.28
SHOX2-201ENST00000389589 IFIT1BQ5T764 474 aaKnown RBP29.31■■■□□ 2.28
SHOX2-201ENST00000389589 DPP8Q6V1X1 898 aaPredicted RBP29.31■■■□□ 2.28
SHOX2-201ENST00000389589 TRIM22Q8IYM9 498 aa29.31■■■□□ 2.28
SHOX2-201ENST00000389589 SUGT1Q9Y2Z0 365 aa29.31■■■□□ 2.28
SHOX2-201ENST00000389589 C12orf60Q5U649 245 aa29.3■■■□□ 2.28
SHOX2-201ENST00000389589 RBSNQ9H1K0 784 aa29.3■■■□□ 2.28
SHOX2-201ENST00000389589 ROBO3Q96MS0 1386 aa29.3■■■□□ 2.28
SHOX2-201ENST00000389589 TRIM29Q14134 588 aa29.3■■■□□ 2.28
SHOX2-201ENST00000389589 SLC26A6Q9BXS9 759 aa29.3■■■□□ 2.28
SHOX2-201ENST00000389589 CALM1P0DP23 149 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 CALM2P0DP24 149 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 CALM3P0DP25 149 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 CYP2D6P10635 497 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 EZH2Q15910 746 aaKnown RBP29.29■■■□□ 2.28
SHOX2-201ENST00000389589 STYK1Q6J9G0 422 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 CATIPQ7Z7H3 387 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 USP28Q96RU2 1077 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 RIMBP2O15034 1052 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 USP17L8P0C7I0 530 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 BTDP43251 543 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 KIF23Q02241 960 aaPredicted RBP29.29■■■□□ 2.28
SHOX2-201ENST00000389589 C2CD5Q86YS7 1000 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 PGBD1Q96JS3 809 aa29.29■■■□□ 2.28
SHOX2-201ENST00000389589 NUP133Q8WUM0 1156 aa29.28■■■□□ 2.28
SHOX2-201ENST00000389589 ANP32BQ92688 251 aaKnown RBP29.28■■■□□ 2.28
SHOX2-201ENST00000389589 ZNF622Q969S3 477 aaKnown RBP eCLIP29.28■■■□□ 2.28
SHOX2-201ENST00000389589 EYA3Q99504 573 aa29.28■■■□□ 2.28
SHOX2-201ENST00000389589 ANO8Q9HCE9 1232 aaPredicted RBP29.28■■■□□ 2.28
SHOX2-201ENST00000389589 RTEL1Q9NZ71 1219 aa29.28■■■□□ 2.28
SHOX2-201ENST00000389589 FOCADQ5VW36 1801 aa29.28■■■□□ 2.28
SHOX2-201ENST00000389589 GAKO14976 1311 aa29.27■■■□□ 2.28
SHOX2-201ENST00000389589 H0YIN7 160 aa29.27■■■□□ 2.28
SHOX2-201ENST00000389589 KRT40Q6A162 431 aa29.27■■■□□ 2.28
SHOX2-201ENST00000389589 GTF2IP78347 998 aa29.27■■■□□ 2.28
SHOX2-201ENST00000389589 EN1Q05925 392 aaPredicted RBP29.27■■■□□ 2.28
SHOX2-201ENST00000389589 TGFBRAP1Q8WUH2 860 aa29.27■■■□□ 2.28
SHOX2-201ENST00000389589 DDAH1O94760 285 aa29.26■■■□□ 2.27
SHOX2-201ENST00000389589 CEBPZQ03701 1054 aaKnown RBP29.26■■■□□ 2.27
SHOX2-201ENST00000389589 CRACR2BQ8N4Y2 399 aaPredicted RBP29.26■■■□□ 2.27
SHOX2-201ENST00000389589 BICD2Q8TD16 824 aa29.26■■■□□ 2.27
SHOX2-201ENST00000389589 AIFM3Q96NN9 605 aa29.26■■■□□ 2.27
SHOX2-201ENST00000389589 DDX19AQ9NUU7 478 aaKnown RBP29.26■■■□□ 2.27
SHOX2-201ENST00000389589 RBM28Q9NW13 759 aaKnown RBP29.26■■■□□ 2.27
SHOX2-201ENST00000389589 DDX60LQ5H9U9 1706 aaKnown RBP29.26■■■□□ 2.27
SHOX2-201ENST00000389589 LIG1P18858 919 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 MYSM1Q5VVJ2 828 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 NBPF11Q86T75 865 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 GJB4Q9NTQ9 266 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 MYH1P12882 1939 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 DEXIO95424 95 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 EVX2Q03828 476 aa29.25■■■□□ 2.27
SHOX2-201ENST00000389589 TSPY2A6NKD2 308 aa29.24■■■□□ 2.27
SHOX2-201ENST00000389589 POLR3EQ9NVU0 708 aa29.24■■■□□ 2.27
SHOX2-201ENST00000389589 POLR3DP05423 398 aaPredicted RBP29.24■■■□□ 2.27
SHOX2-201ENST00000389589 TEX11Q8IYF3 940 aa29.24■■■□□ 2.27
SHOX2-201ENST00000389589 NUP62CLQ9H1M0 184 aa29.24■■■□□ 2.27
SHOX2-201ENST00000389589 YEATS4O95619 227 aa29.23■■■□□ 2.27
SHOX2-201ENST00000389589 CCDC178Q5BJE1 867 aa29.23■■■□□ 2.27
SHOX2-201ENST00000389589 OLFM4Q6UX06 510 aa29.23■■■□□ 2.27
SHOX2-201ENST00000389589 RNF26Q9BY78 433 aaPredicted RBP29.23■■■□□ 2.27
SHOX2-201ENST00000389589 FTOQ9C0B1 505 aaKnown RBP eCLIP29.23■■■□□ 2.27
SHOX2-201ENST00000389589 KIF28PB7ZC32 967 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 FAM47AQ5JRC9 791 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 ZNF287Q9HBT7 754 aa29.22■■■□□ 2.27
SHOX2-201ENST00000389589 SLX4Q8IY92 1834 aa29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms