RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 XPOTO43592 962 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 GMPSP49915 693 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 GTF2A2P52657 109 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 KLHL10Q6JEL2 608 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 GAS8O95995 478 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 CTCFP49711 727 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 XAGE2Q96GT9 111 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 NUDT12Q9BQG2 462 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 TNS3Q68CZ2 1445 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 A0A1B0GUL7 405 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 SCARF1Q14162 830 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 PCDHA1Q9Y5I3 950 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 EDC4Q6P2E9 1401 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 EXOC8Q8IYI6 725 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 ARRDC4Q8NCT1 418 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 RNF208Q9H0X6 261 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 CHADLQ6NUI6 762 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 INPP5FQ9Y2H2 1132 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 P4HA1P13674 534 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 RAG1P15918 1043 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 MIER3Q7Z3K6 550 aa10.41□□□□□ -0.74
LIMCH1-202ENST00000381753 SEMA3EO15041 775 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 NCAPH2Q6IBW4 605 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 CHD1LQ86WJ1 897 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 RYBPQ8N488 228 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 FAM49AQ9H0Q0 323 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 KLF18A0A0U1RQI7 1052 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 SPDYE16A6NNV3 312 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 USP17L5A8MUK1 530 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 SPDYE2Q495Y8 402 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 PARD3BQ8TEW8 1205 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 PYM1Q9BRP8 204 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 RNF123Q5XPI4 1314 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 UBE2Q2LH0YL09 131 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 CCDC172P0C7W6 258 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 MTIF2P46199 727 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 ARHGEF25Q86VW2 580 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 ZKSCAN3Q9BRR0 538 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 NDC80O14777 642 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 FKTNO75072 461 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 ZBTB38Q8NAP3 1195 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 FBXO40Q9UH90 709 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 FANCIQ9NVI1 1328 aa10.4□□□□□ -0.74
LIMCH1-202ENST00000381753 SLFN13Q68D06 897 aa10.4□□□□□ -0.75
LIMCH1-202ENST00000381753 KCNG1Q9UIX4 513 aa10.4□□□□□ -0.75
LIMCH1-202ENST00000381753 FAM135BQ49AJ0 1406 aa10.4□□□□□ -0.75
LIMCH1-202ENST00000381753 ANKARQ7Z5J8 1434 aa10.4□□□□□ -0.75
LIMCH1-202ENST00000381753 PRDM1O75626 825 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 CCND2P30279 289 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 JPH2Q9BR39 696 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 SLC7A5P2Q9GIP4 190 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 MLH3Q9UHC1 1453 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 TMEM88BA6NKF7 163 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 ASNSP08243 561 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 C6orf222P0C671 652 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 ANXA13P27216 316 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 MCMDC2Q4G0Z9 681 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 SPATA31A1Q5TZJ5 1347 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 STX10O60499 249 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 RASSF7Q02833 373 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 ARMCX5Q6P1M9 558 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 USP17L2Q6R6M4 530 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 DHX36Q9H2U1 1008 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 CCDC171Q6TFL3 1326 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 ADCY7P51828 1080 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 KRT85P78386 507 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 PODNQ7Z5L7 613 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 CEP57Q86XR8 500 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 CCDC114Q96M63 670 aa10.39□□□□□ -0.75
LIMCH1-202ENST00000381753 MAP3K7O43318 606 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 TDRD12Q587J7 1177 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 MOSPD1Q9UJG1 213 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 NONOQ15233 471 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 RC3H1Q5TC82 1133 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 AAASQ9NRG9 546 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 ARPP21Q9UBL0 812 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 TSKSQ9UJT2 592 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 STAT6P42226 847 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 POLGP54098 1239 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 FBXO11Q86XK2 927 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 LRRC47Q8N1G4 583 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 RHPN1Q8TCX5 695 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 LEO1Q8WVC0 666 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 SSH1Q8WYL5 1049 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 CDCA7LQ96GN5 454 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 GLT1D1Q96MS3 346 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 NOX5Q96PH1 765 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 SWAP70Q9UH65 585 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 FPGT-TNNI3KV9GXZ4 949 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 CRB1P82279 1406 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 COPB2P35606 906 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 APOBRQ0VD83 1088 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 PRPF31Q8WWY3 499 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 PKNOX2Q96KN3 472 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 GAS7O60861 476 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 PPP2R5BQ15173 497 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 C4orf50Q6ZRC1 276 aa10.38□□□□□ -0.75
LIMCH1-202ENST00000381753 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms