RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RANBP6O60518 1105 aaKnown RBP16.14■□□□□ 0.17
PTPRF-202ENST00000372405 FOSBP53539 338 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 KIAA2012Q0VF49 1180 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 SART3Q15020 963 aaKnown RBP16.14■□□□□ 0.17
PTPRF-202ENST00000372405 NTRK3Q16288 839 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 DCAF8Q5TAQ9 597 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 CC2D2BQ6DHV5 1058 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 CERS3Q8IU89 383 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 SLF2Q8IX21 1173 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 TEX11Q8IYF3 940 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 TTLL6Q8N841 843 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 CHMP4CQ96CF2 233 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 DYNLL2Q96FJ2 89 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 ATP6V1DQ9Y5K8 247 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 SLC12A7Q9Y666 1083 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 DDX49Q9Y6V7 483 aaKnown RBP16.14■□□□□ 0.17
PTPRF-202ENST00000372405 CCDC69A6NI79 296 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 FLT1P17948 1338 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 PLCD1P51178 756 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 RESTQ13127 1097 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 USP48Q86UV5 1035 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 TMEM87AQ8NBN3 555 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 ZSCAN10Q96SZ4 725 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-202ENST00000372405 UBAC1Q9BSL1 405 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 SAP30BPQ9UHR5 308 aaKnown RBP16.13■□□□□ 0.17
PTPRF-202ENST00000372405 PSME4Q14997 1843 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 GOLGA8AA7E2F4 631 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 CPLX1O14810 134 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 PLCG2P16885 1265 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 DEKP35659 375 aaKnown RBP16.13■□□□□ 0.17
PTPRF-202ENST00000372405 SCNN1DP51172 638 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 FAM47AQ5JRC9 791 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 DACT2Q5SW24 774 aa16.13■□□□□ 0.17
PTPRF-202ENST00000372405 ATF5Q9Y2D1 282 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-202ENST00000372405 NMT2O60551 498 aa16.12■□□□□ 0.17
PTPRF-202ENST00000372405 GADD45BO75293 160 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-202ENST00000372405 STRIP1Q5VSL9 837 aa16.12■□□□□ 0.17
PTPRF-202ENST00000372405 ORC3Q9UBD5 711 aaPredicted RBP16.12■□□□□ 0.17
PTPRF-202ENST00000372405 BRCA1P38398 1863 aaKnown RBP16.12■□□□□ 0.17
PTPRF-202ENST00000372405 COL4A5P29400 1685 aa16.12■□□□□ 0.17
PTPRF-202ENST00000372405 ERICH2A1L162 156 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 H3BQV1 296 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 SLC3A2P08195 630 aaKnown RBP16.11■□□□□ 0.17
PTPRF-202ENST00000372405 PDE4BQ07343 736 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 IFFO2Q5TF58 517 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 ZNF654Q8IZM8 581 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 TMTC2Q8N394 836 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 SLC44A5Q8NCS7 719 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 YDJCA8MPS7 323 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 FIBPO43427 364 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 PHKBQ93100 1093 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 GJB4Q9NTQ9 266 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 KIF3AQ9Y496 699 aa16.11■□□□□ 0.17
PTPRF-202ENST00000372405 UBE2Q2LH0YL09 131 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 FKBP1AP62942 108 aaKnown RBP16.1■□□□□ 0.17
PTPRF-202ENST00000372405 GUCY1B3Q02153 619 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 OTUD7BQ6GQQ9 843 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 APOBEC3HQ6NTF7 200 aaKnown RBP16.1■□□□□ 0.17
PTPRF-202ENST00000372405 HHIPL2Q6UWX4 724 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 IQCA1Q86XH1 822 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 AIFM3Q96NN9 605 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 MTFR1LQ9H019 292 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 PCDHAC2Q9Y5I4 1007 aa16.1■□□□□ 0.17
PTPRF-202ENST00000372405 PPIP5K2O43314 1243 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 WDHD1O75717 1129 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 POLR3DP05423 398 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 NCLP19338 710 aaKnown RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 RCAN1P53805 252 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 CCDC93Q567U6 631 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 KIAA0825Q8IV33 1275 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 SUPT20HQ8NEM7 779 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 DDX4Q9NQI0 724 aaKnown RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 USP17L3A6NCW0 530 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 USP17L4A6NCW7 530 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 R3HDM1Q15032 1099 aaKnown RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 RCSD1Q6JBY9 416 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 SYNE3Q6ZMZ3 975 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 USP17L1Q7RTZ2 530 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 ILDR1Q86SU0 546 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-202ENST00000372405 FANCBQ8NB91 859 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 TEKT1Q969V4 418 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 IL17RBQ9NRM6 502 aa16.09■□□□□ 0.17
PTPRF-202ENST00000372405 CDKL5O76039 1030 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 IFNAR1P17181 557 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 CRKP46108 304 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 TROAPQ12815 778 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 RTN1Q16799 776 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 IFIT1BQ5T764 474 aaKnown RBP16.08■□□□□ 0.16
PTPRF-202ENST00000372405 CDC42EP5Q6NZY7 148 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 RTKN2Q8IZC4 609 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 FBXO18Q8NFZ0 1043 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 PSMD1Q99460 953 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 ZSCAN16Q9H4T2 348 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-202ENST00000372405 MYH6P13533 1939 aa16.08■□□□□ 0.16
PTPRF-202ENST00000372405 TSPY2A6NKD2 308 aa16.07■□□□□ 0.16
PTPRF-202ENST00000372405 RASA1P20936 1047 aa16.07■□□□□ 0.16
PTPRF-202ENST00000372405 TFAP4Q01664 338 aa16.07■□□□□ 0.16
PTPRF-202ENST00000372405 GRIPAP1Q4V328 841 aa16.07■□□□□ 0.16
PTPRF-202ENST00000372405 CAVIN1Q6NZI2 390 aaKnown RBP16.07■□□□□ 0.16
PTPRF-202ENST00000372405 C16orf86Q6ZW13 317 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms