RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 MICU3Q86XE3 530 aa16.27■□□□□ 0.19
USF1-202ENST00000368020 TRIM22Q8IYM9 498 aa16.27■□□□□ 0.19
USF1-202ENST00000368020 MRPS27Q92552 414 aaKnown RBP16.27■□□□□ 0.19
USF1-202ENST00000368020 MRVI1Q9Y6F6 885 aa16.27■□□□□ 0.19
USF1-202ENST00000368020 DLEC1Q9Y238 1755 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 IFNAR1P17181 557 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 HIBADHP31937 336 aaKnown RBP16.26■□□□□ 0.19
USF1-202ENST00000368020 GUCY1B3Q02153 619 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 CEBPZQ03701 1054 aaKnown RBP16.26■□□□□ 0.19
USF1-202ENST00000368020 CTDSPL2Q05D32 466 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 SSRP1Q08945 709 aaKnown RBP16.26■□□□□ 0.19
USF1-202ENST00000368020 CAMK4Q16566 473 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 LINC00301Q8NCQ3 95 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 UBAC1Q9BSL1 405 aa16.26■□□□□ 0.19
USF1-202ENST00000368020 COL1A1P02452 1464 aaPredicted RBP16.26■□□□□ 0.19
USF1-202ENST00000368020 FMNL1O95466 1100 aaPredicted RBP16.25■□□□□ 0.19
USF1-202ENST00000368020 GNL2Q13823 731 aaKnown RBP16.25■□□□□ 0.19
USF1-202ENST00000368020 SP8Q8IXZ3 490 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 MIGA1Q8NAN2 632 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 RIOK1Q9BRS2 568 aaKnown RBP16.25■□□□□ 0.19
USF1-202ENST00000368020 MYH6P13533 1939 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 SPTLC2O15270 562 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 NTRK3Q16288 839 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.25■□□□□ 0.19
USF1-202ENST00000368020 TOMM22Q9NS69 142 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 ATP6V0A2Q9Y487 856 aa16.25■□□□□ 0.19
USF1-202ENST00000368020 PRKAB2O43741 272 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 SLC3A2P08195 630 aaKnown RBP16.24■□□□□ 0.19
USF1-202ENST00000368020 CHRNA5P30532 468 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 SAFBQ15424 915 aaKnown RBP eCLIP16.24■□□□□ 0.19
USF1-202ENST00000368020 STX1AQ16623 288 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 RTN1Q16799 776 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 ANO1Q5XXA6 986 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 CKAP2LQ8IYA6 745 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 FSIP1Q8NA03 581 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 ENGASEQ8NFI3 743 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 ZNF622Q969S3 477 aaKnown RBP eCLIP16.24■□□□□ 0.197e-6■■□□□ 12.8
USF1-202ENST00000368020 CRNKL1Q9BZJ0 848 aaKnown RBP16.24■□□□□ 0.19
USF1-202ENST00000368020 LEMD3Q9Y2U8 911 aa16.24■□□□□ 0.19
USF1-202ENST00000368020 BAZ2AQ9UIF9 1905 aaKnown RBP16.23■□□□□ 0.19
USF1-202ENST00000368020 PPEF1O14829 653 aaPredicted RBP16.23■□□□□ 0.19
USF1-202ENST00000368020 CALM1P0DP23 149 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 CALM2P0DP24 149 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 CALM3P0DP25 149 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 KCNA3P22001 575 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 U2AF2P26368 475 aaKnown RBP eCLIP16.23■□□□□ 0.19
USF1-202ENST00000368020 CDC27P30260 824 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 ANO6Q4KMQ2 910 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 KRT40Q6A162 431 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 CERS3Q8IU89 383 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 ATP8A2Q9NTI2 1148 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 PODXL2Q9NZ53 605 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 PCDHA7Q9UN72 937 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 LRRC37AA6NMS7 1700 aa16.23■□□□□ 0.19
USF1-202ENST00000368020 PPP6R2O75170 966 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 DEXIO95424 95 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 FGRP09769 529 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 KIAA2012Q0VF49 1180 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 SNW1Q13573 536 aaKnown RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 RRP12Q5JTH9 1297 aaKnown RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 CC2D2BQ6DHV5 1058 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 IQCA1Q86XH1 822 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 TDRD7Q8NHU6 1098 aaKnown RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 NSUN4Q96CB9 384 aaKnown RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 NAT10Q9H0A0 1025 aaKnown RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 ANO10Q9NW15 660 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 IQSEC3Q9UPP2 1182 aaPredicted RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 MYH2Q9UKX2 1941 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 XDHP47989 1333 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 POLR3DP05423 398 aaPredicted RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 DPEP1P16444 411 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 XBP1P17861 261 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 ZNF165P49910 485 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 SLC39A14Q15043 492 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 GRIPAP1Q4V328 841 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 TTLL6Q8N841 843 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 WDR66Q8TBY9 1149 aa16.22■□□□□ 0.19
USF1-202ENST00000368020 TMX4Q9H1E5 349 aaPredicted RBP16.22■□□□□ 0.19
USF1-202ENST00000368020 CMA1P23946 247 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 ZRSR1Q15695 479 aaKnown RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 C15orf52Q6ZUT6 534 aaKnown RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 ADGRA1Q86SQ6 560 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 SLX4Q8IY92 1834 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 ZNF654Q8IZM8 581 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 FMR1NBQ8N0W7 255 aaPredicted RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 C7orf43Q8WVR3 580 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 FTOQ9C0B1 505 aaKnown RBP eCLIP16.21■□□□□ 0.19
USF1-202ENST00000368020 CBX8Q9HC52 389 aa16.21■□□□□ 0.19
USF1-202ENST00000368020 FAM217BQ9NTX9 383 aaPredicted RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 RBM28Q9NW13 759 aaKnown RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 ARPP21Q9UBL0 812 aaPredicted RBP16.21■□□□□ 0.19
USF1-202ENST00000368020 MINDY4BA8MYZ0 360 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 OTUD7BQ6GQQ9 843 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 RAB11FIP4Q86YS3 637 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 FANCBQ8NB91 859 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 SDR42E1Q8WUS8 393 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 TIGD1Q96MW7 591 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 SLC26A6Q9BXS9 759 aa16.2■□□□□ 0.18
USF1-202ENST00000368020 RNF26Q9BY78 433 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms