RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TTF1Q15361 905 aaPredicted RBP22.36■■□□□ 1.17
CLN3-202ENST00000355477 PI4KBQ9UBF8 816 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 PALD1Q9ULE6 856 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 AFG3L2Q9Y4W6 797 aa22.36■■□□□ 1.17
CLN3-202ENST00000355477 HTTP42858 3142 aa22.35■■□□□ 1.17
CLN3-202ENST00000355477 CXCL11O14625 94 aa22.35■■□□□ 1.17
CLN3-202ENST00000355477 ATP5JP18859 108 aa22.35■■□□□ 1.17
CLN3-202ENST00000355477 PKN2Q16513 984 aaKnown RBP22.35■■□□□ 1.17
CLN3-202ENST00000355477 CCDC84Q86UT8 332 aaPredicted RBP22.35■■□□□ 1.17
CLN3-202ENST00000355477 CD99L2Q8TCZ2 262 aa22.35■■□□□ 1.17
CLN3-202ENST00000355477 DHX36Q9H2U1 1008 aaKnown RBP22.35■■□□□ 1.17
CLN3-202ENST00000355477 BOLA2Q9H3K6 86 aa22.35■■□□□ 1.17
CLN3-202ENST00000355477 ZCCHC17Q9NP64 241 aaKnown RBP22.35■■□□□ 1.17
CLN3-202ENST00000355477 SAP30BPQ9UHR5 308 aaKnown RBP22.35■■□□□ 1.17
CLN3-202ENST00000355477 SP3Q02447 781 aa22.34■■□□□ 1.17
CLN3-202ENST00000355477 SLC9C2Q5TAH2 1124 aa22.34■■□□□ 1.17
CLN3-202ENST00000355477 HPS5Q9UPZ3 1129 aa22.34■■□□□ 1.17
CLN3-202ENST00000355477 ZSWIM8A7E2V4 1837 aa22.34■■□□□ 1.17
CLN3-202ENST00000355477 PDE6AP16499 860 aa22.33■■□□□ 1.17
CLN3-202ENST00000355477 TMED8Q6PL24 325 aaPredicted RBP22.33■■□□□ 1.17
CLN3-202ENST00000355477 OTOP1Q7RTM1 612 aa22.33■■□□□ 1.17
CLN3-202ENST00000355477 ANKRD23Q86SG2 305 aa22.33■■□□□ 1.17
CLN3-202ENST00000355477 ERO1AQ96HE7 468 aa22.33■■□□□ 1.17
CLN3-202ENST00000355477 RIOK1Q9BRS2 568 aaKnown RBP22.33■■□□□ 1.17
CLN3-202ENST00000355477 HERC5Q9UII4 1024 aaKnown RBP22.33■■□□□ 1.17
CLN3-202ENST00000355477 PDHXO00330 501 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 TLR2O60603 784 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 CAP2P40123 477 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 SLC4A8Q2Y0W8 1093 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 GPAT2Q6NUI2 795 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 CRBNQ96SW2 442 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 DNAJC18Q9H819 358 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 PAG1Q9NWQ8 432 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 TRIM17Q9Y577 477 aa22.32■■□□□ 1.16
CLN3-202ENST00000355477 A0A0G2JLL6 359 aaPredicted RBP22.31■■□□□ 1.16
CLN3-202ENST00000355477 TCRBV5S4A2TA0A5A2 114 aa22.31■■□□□ 1.16
CLN3-202ENST00000355477 FBXO46Q6PJ61 603 aaPredicted RBP22.31■■□□□ 1.16
CLN3-202ENST00000355477 PRRT2Q7Z6L0 340 aaPredicted RBP22.31■■□□□ 1.16
CLN3-202ENST00000355477 METTL16Q86W50 562 aaKnown RBP22.31■■□□□ 1.16
CLN3-202ENST00000355477 FOXP4Q8IVH2 680 aaPredicted RBP22.31■■□□□ 1.16
CLN3-202ENST00000355477 HAUS7Q99871 368 aa22.31■■□□□ 1.16
CLN3-202ENST00000355477 CENPFP49454 3210 aa22.31■■□□□ 1.16
CLN3-202ENST00000355477 ZNF532Q9HCE3 1301 aa22.31■■□□□ 1.16
CLN3-202ENST00000355477 MAGEB6P1A0A0J9YX57 407 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 TRIM75PA6NK02 468 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 USP5P45974 858 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 JAG1P78504 1218 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 SLFNL1Q499Z3 407 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 CERS3Q8IU89 383 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 NAV1Q8NEY1 1877 aa22.3■■□□□ 1.16
CLN3-202ENST00000355477 DDX60LQ5H9U9 1706 aaKnown RBP22.28■■□□□ 1.16
CLN3-202ENST00000355477 CHGBP05060 677 aa22.28■■□□□ 1.16
CLN3-202ENST00000355477 SHROOM1Q2M3G4 852 aaPredicted RBP22.28■■□□□ 1.16
CLN3-202ENST00000355477 C17orf99Q6UX52 265 aa22.28■■□□□ 1.16
CLN3-202ENST00000355477 GADL1Q6ZQY3 521 aa22.28■■□□□ 1.16
CLN3-202ENST00000355477 FASTKD5Q7L8L6 764 aaKnown RBP22.28■■□□□ 1.16
CLN3-202ENST00000355477 CRACR2BQ8N4Y2 399 aaPredicted RBP22.28■■□□□ 1.16
CLN3-202ENST00000355477 EFCC1Q9HA90 598 aa22.28■■□□□ 1.16
CLN3-202ENST00000355477 ADGRA2Q96PE1 1338 aa22.28■■□□□ 1.16
CLN3-202ENST00000355477 BAZ2AQ9UIF9 1905 aaKnown RBP22.27■■□□□ 1.16
CLN3-202ENST00000355477 SPP2Q13103 211 aa22.27■■□□□ 1.16
CLN3-202ENST00000355477 CPA4Q9UI42 421 aa22.27■■□□□ 1.16
CLN3-202ENST00000355477 LOC285556D6RIA3 1793 aa22.27■■□□□ 1.16
CLN3-202ENST00000355477 USP17L5A8MUK1 530 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 HLA-DOAP06340 250 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 CYP2C8P10632 490 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 ADD2P35612 726 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 RGS19P49795 217 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 LCORLQ8N3X6 602 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 ZNF280CQ8ND82 737 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 ARHGAP39Q9C0H5 1083 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 ECHDC1Q9NTX5 307 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 PTPN22Q9Y2R2 807 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 MGAMO43451 1857 aa22.26■■□□□ 1.15
CLN3-202ENST00000355477 TNRC18O15417 2968 aaPredicted RBP22.25■■□□□ 1.15
CLN3-202ENST00000355477 LACTBP83111 547 aaPredicted RBP22.25■■□□□ 1.15
CLN3-202ENST00000355477 TSHZ3Q63HK5 1081 aa22.25■■□□□ 1.15
CLN3-202ENST00000355477 TRIM34Q9BYJ4 488 aa22.25■■□□□ 1.15
CLN3-202ENST00000355477 GDF11O95390 407 aa22.24■■□□□ 1.15
CLN3-202ENST00000355477 PLCD1P51178 756 aa22.24■■□□□ 1.15
CLN3-202ENST00000355477 SOX10P56693 466 aa22.24■■□□□ 1.15
CLN3-202ENST00000355477 TREML2Q5T2D2 321 aa22.24■■□□□ 1.15
CLN3-202ENST00000355477 CRNKL1Q9BZJ0 848 aaKnown RBP22.24■■□□□ 1.15
CLN3-202ENST00000355477 ARMT1Q9H993 441 aa22.24■■□□□ 1.15
CLN3-202ENST00000355477 ECM2O94769 699 aaPredicted RBP22.23■■□□□ 1.15
CLN3-202ENST00000355477 ASNSP08243 561 aa22.23■■□□□ 1.15
CLN3-202ENST00000355477 CTGFP29279 349 aa22.23■■□□□ 1.15
CLN3-202ENST00000355477 EVX2Q03828 476 aa22.23■■□□□ 1.15
CLN3-202ENST00000355477 SDR42E1Q8WUS8 393 aa22.23■■□□□ 1.15
CLN3-202ENST00000355477 PARK7Q99497 189 aaKnown RBP22.23■■□□□ 1.15
CLN3-202ENST00000355477 TBC1D2Q9BYX2 928 aa22.23■■□□□ 1.15
CLN3-202ENST00000355477 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.23■■□□□ 1.152e-6■■■■■ 40.7
CLN3-202ENST00000355477 HMGCS2P54868 508 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 TATDN1Q6P1N9 297 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 TTC6Q86TZ1 520 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 OTUD7AQ8TE49 926 aaPredicted RBP22.22■■□□□ 1.15
CLN3-202ENST00000355477 WDR18Q9BV38 432 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 EHD4Q9H223 541 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 SERPINB13Q9UIV8 391 aa22.22■■□□□ 1.15
CLN3-202ENST00000355477 AGTPBP1Q9UPW5 1226 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms