RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 TM4SF4P48230 202 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 PDE1AP54750 535 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 MAP3K10Q02779 954 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 PPATQ06203 517 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 PPIL2Q13356 520 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 TTC6Q86TZ1 520 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 SCYL3Q8IZE3 742 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 PALD1Q9ULE6 856 aa23.12■■□□□ 1.29
SYNE4-202ENST00000340477 ATAD5Q96QE3 1844 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 RNF113AO15541 343 aaKnown RBP23.11■■□□□ 1.29
SYNE4-202ENST00000340477 CTNND1O60716 968 aaKnown RBP23.11■■□□□ 1.29
SYNE4-202ENST00000340477 TRPA1O75762 1119 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 LBX1P52954 281 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 FOXP4Q8IVH2 680 aaPredicted RBP23.11■■□□□ 1.29
SYNE4-202ENST00000340477 AMOTL1Q8IY63 956 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 LCORLQ8N3X6 602 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 ARMT1Q9H993 441 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 RNF186Q9NXI6 227 aa23.11■■□□□ 1.29
SYNE4-202ENST00000340477 DDX60LQ5H9U9 1706 aaKnown RBP23.11■■□□□ 1.29
SYNE4-202ENST00000340477 SIPA1L1O43166 1804 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 PHF20L1A8MW92 1017 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 POLR3DP05423 398 aaPredicted RBP23.1■■□□□ 1.29
SYNE4-202ENST00000340477 GJA5P36382 358 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 SNAPC2Q13487 334 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 CNKSR2Q8WXI2 1034 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 APPBP2Q92624 585 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 PRDM10Q9NQV6 1147 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 TSKSQ9UJT2 592 aa23.1■■□□□ 1.29
SYNE4-202ENST00000340477 FAM196BA6NMK8 535 aa23.09■■□□□ 1.29
SYNE4-202ENST00000340477 CETPP11597 493 aa23.09■■□□□ 1.29
SYNE4-202ENST00000340477 CCL15-CCL14A0A0B4J2E2 113 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 CCL15Q16663 113 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 SLC4A8Q2Y0W8 1093 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 IFNL1Q8IU54 200 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 EVI5LQ96CN4 794 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 ATP8A2Q9NTI2 1148 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 MCM9Q9NXL9 1143 aa23.08■■□□□ 1.29
SYNE4-202ENST00000340477 SDR42E1Q8WUS8 393 aa23.07■■□□□ 1.28
SYNE4-202ENST00000340477 EHD4Q9H223 541 aa23.07■■□□□ 1.28
SYNE4-202ENST00000340477 SERPINB13Q9UIV8 391 aa23.07■■□□□ 1.28
SYNE4-202ENST00000340477 SLC4A4Q9Y6R1 1079 aa23.07■■□□□ 1.28
SYNE4-202ENST00000340477 IRF6O14896 467 aa23.06■■□□□ 1.28
SYNE4-202ENST00000340477 NEFLP07196 543 aa23.06■■□□□ 1.28
SYNE4-202ENST00000340477 CENPBP07199 599 aaPredicted RBP23.06■■□□□ 1.28
SYNE4-202ENST00000340477 SLFNL1Q499Z3 407 aa23.06■■□□□ 1.28
SYNE4-202ENST00000340477 PUS7LQ9H0K6 701 aaKnown RBP23.06■■□□□ 1.28
SYNE4-202ENST00000340477 DCP1AQ9NPI6 582 aaPredicted RBP23.06■■□□□ 1.28
SYNE4-202ENST00000340477 TESPA1A2RU30 521 aaPredicted RBP23.05■■□□□ 1.28
SYNE4-202ENST00000340477 TRIM6-TRIM34B2RNG4 842 aa23.05■■□□□ 1.28
SYNE4-202ENST00000340477 TBC1D2Q9BYX2 928 aa23.05■■□□□ 1.28
SYNE4-202ENST00000340477 ZHX2Q9Y6X8 837 aa23.05■■□□□ 1.28
SYNE4-202ENST00000340477 BAZ2AQ9UIF9 1905 aaKnown RBP23.05■■□□□ 1.28
SYNE4-202ENST00000340477 MYH8P13535 1937 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 CHGBP05060 677 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 SLURP2P0DP57 97 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 PTPRAP18433 802 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 GNAT2P19087 354 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 CAP2P40123 477 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 METTL16Q86W50 562 aaKnown RBP23.04■■□□□ 1.28
SYNE4-202ENST00000340477 MS4A4AQ96JQ5 239 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 GINM1Q9NU53 330 aa23.04■■□□□ 1.28
SYNE4-202ENST00000340477 IGF2BP3O00425 579 aaKnown RBP eCLIP23.03■■□□□ 1.28
SYNE4-202ENST00000340477 CXCL11O14625 94 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 ASNSP08243 561 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 TICAM2Q86XR7 235 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 PLEKHM2Q8IWE5 1019 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 BRI3BPQ8WY22 251 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 AS3MTQ9HBK9 375 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 TAOK2Q9UL54 1235 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 KCNH4Q9UQ05 1017 aa23.03■■□□□ 1.28
SYNE4-202ENST00000340477 PRKAB2O43741 272 aa23.02■■□□□ 1.28
SYNE4-202ENST00000340477 OSBP2Q969R2 916 aa23.02■■□□□ 1.28
SYNE4-202ENST00000340477 RILPL2Q969X0 211 aa23.02■■□□□ 1.28
SYNE4-202ENST00000340477 STRBPQ96SI9 672 aaKnown RBP23.02■■□□□ 1.28
SYNE4-202ENST00000340477 OSBPL3Q9H4L5 887 aa23.02■■□□□ 1.28
SYNE4-202ENST00000340477 PHIPQ8WWQ0 1821 aa23.02■■□□□ 1.28
SYNE4-202ENST00000340477 GPAA1O43292 621 aa23.01■■□□□ 1.27
SYNE4-202ENST00000340477 TBC1D8O95759 1140 aa23.01■■□□□ 1.27
SYNE4-202ENST00000340477 CFHR5Q9BXR6 569 aa23.01■■□□□ 1.27
SYNE4-202ENST00000340477 DNAJC18Q9H819 358 aa23.01■■□□□ 1.27
SYNE4-202ENST00000340477 ZCCHC17Q9NP64 241 aaKnown RBP23.01■■□□□ 1.27
SYNE4-202ENST00000340477 ARPP21Q9UBL0 812 aaPredicted RBP23.01■■□□□ 1.27
SYNE4-202ENST00000340477 CASP8AP2Q9UKL3 1982 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 USP17L5A8MUK1 530 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 APPP05067 770 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 PLCD1P51178 756 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 TAF1CQ15572 869 aaPredicted RBP23■■□□□ 1.27
SYNE4-202ENST00000340477 ZMYM1Q5SVZ6 1142 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 GIMAP6Q6P9H5 292 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 FASTKD5Q7L8L6 764 aaKnown RBP23■■□□□ 1.27
SYNE4-202ENST00000340477 NACAP1Q9BZK3 213 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 SWAP70Q9UH65 585 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 PTPRFP10586 1907 aa23■■□□□ 1.27
SYNE4-202ENST00000340477 TRIM75PA6NK02 468 aa22.99■■□□□ 1.27
SYNE4-202ENST00000340477 M0R2C6 588 aa22.99■■□□□ 1.27
SYNE4-202ENST00000340477 GDF11O95390 407 aa22.99■■□□□ 1.27
SYNE4-202ENST00000340477 CERKLQ49MI3 558 aaPredicted RBP22.99■■□□□ 1.27
SYNE4-202ENST00000340477 COL13A1Q5TAT6 717 aaPredicted RBP22.99■■□□□ 1.27
SYNE4-202ENST00000340477 PTPN18Q99952 460 aa22.99■■□□□ 1.27
SYNE4-202ENST00000340477 ZFYVE28Q9HCC9 887 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms