RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HMMRO75330 724 aa23.83■■□□□ 1.41
LIME1-201ENST00000309546 CYP7A1P22680 504 aa23.83■■□□□ 1.41
LIME1-201ENST00000309546 GPAT2Q6NUI2 795 aa23.83■■□□□ 1.41
LIME1-201ENST00000309546 C17orf99Q6UX52 265 aa23.83■■□□□ 1.41
LIME1-201ENST00000309546 FASTKD5Q7L8L6 764 aaKnown RBP23.83■■□□□ 1.41
LIME1-201ENST00000309546 RHPN1Q8TCX5 695 aa23.83■■□□□ 1.41
LIME1-201ENST00000309546 CYP2C8P10632 490 aa23.82■■□□□ 1.4
LIME1-201ENST00000309546 RPAP2Q8IXW5 612 aaPredicted RBP23.82■■□□□ 1.4
LIME1-201ENST00000309546 ZBTB40Q9NUA8 1239 aa23.82■■□□□ 1.4
LIME1-201ENST00000309546 RBBP6Q7Z6E9 1792 aaKnown RBP23.82■■□□□ 1.4
LIME1-201ENST00000309546 FLT1P17948 1338 aa23.82■■□□□ 1.4
LIME1-201ENST00000309546 ADGRA2Q96PE1 1338 aa23.82■■□□□ 1.4
LIME1-201ENST00000309546 PPP4CP60510 307 aa23.81■■□□□ 1.4
LIME1-201ENST00000309546 DYNLL1P63167 89 aaKnown RBP23.81■■□□□ 1.4
LIME1-201ENST00000309546 SLC9C1Q4G0N8 1177 aa23.81■■□□□ 1.4
LIME1-201ENST00000309546 ARMC5Q96C12 935 aa23.81■■□□□ 1.4
LIME1-201ENST00000309546 ANTXR1Q9H6X2 564 aa23.81■■□□□ 1.4
LIME1-201ENST00000309546 TNRC18O15417 2968 aaPredicted RBP23.81■■□□□ 1.4
LIME1-201ENST00000309546 CLASRPQ8N2M8 674 aaKnown RBP23.8■■□□□ 1.4
LIME1-201ENST00000309546 MAGEB6Q8N7X4 407 aa23.8■■□□□ 1.4
LIME1-201ENST00000309546 KIF1BPQ96EK5 621 aa23.8■■□□□ 1.4
LIME1-201ENST00000309546 DHX36Q9H2U1 1008 aaKnown RBP23.8■■□□□ 1.4
LIME1-201ENST00000309546 PI4KBQ9UBF8 816 aa23.8■■□□□ 1.4
LIME1-201ENST00000309546 HERC5Q9UII4 1024 aaKnown RBP23.8■■□□□ 1.4
LIME1-201ENST00000309546 MYH1P12882 1939 aa23.8■■□□□ 1.4
LIME1-201ENST00000309546 MGAMO43451 1857 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 POTEFA5A3E0 1075 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 IGSF3O75054 1194 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 PSMC4P43686 418 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 SLC4A8Q2Y0W8 1093 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 MIGA1Q8NAN2 632 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 TRIM34Q9BYJ4 488 aa23.79■■□□□ 1.4
LIME1-201ENST00000309546 CHMP4BQ9H444 224 aaKnown RBP23.79■■□□□ 1.4
LIME1-201ENST00000309546 SAP30BPQ9UHR5 308 aaKnown RBP23.79■■□□□ 1.4
LIME1-201ENST00000309546 FMNL1O95466 1100 aaPredicted RBP23.78■■□□□ 1.4
LIME1-201ENST00000309546 CTGFP29279 349 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 CAP2P40123 477 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 MAP3K12Q12852 859 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 RRP1BQ14684 758 aaKnown RBP23.78■■□□□ 1.4
LIME1-201ENST00000309546 SIRT2Q8IXJ6 389 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 CRACR2BQ8N4Y2 399 aaPredicted RBP23.78■■□□□ 1.4
LIME1-201ENST00000309546 PALD1Q9ULE6 856 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 LOC285556D6RIA3 1793 aa23.78■■□□□ 1.4
LIME1-201ENST00000309546 PDE4DIPQ5VU43 2346 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 MYCP01106 439 aaPredicted RBP23.77■■□□□ 1.4
LIME1-201ENST00000309546 GNRH1P01148 92 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 IFIT2P09913 472 aaKnown RBP23.77■■□□□ 1.4
LIME1-201ENST00000309546 SPP2Q13103 211 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 C20orf194Q5TEA3 1177 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 NBPF11Q86T75 865 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 ZNF333Q96JL9 665 aa23.77■■□□□ 1.4
LIME1-201ENST00000309546 CENPFP49454 3210 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 HLA-DOAP06340 250 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 ZNF280CQ8ND82 737 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 SMCR8Q8TEV9 937 aaPredicted RBP23.76■■□□□ 1.39
LIME1-201ENST00000309546 SH3TC2Q8TF17 1288 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 TRIM47Q96LD4 638 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 AGTPBP1Q9UPW5 1226 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 SLC45A1Q9Y2W3 748 aa23.76■■□□□ 1.39
LIME1-201ENST00000309546 USP17L5A8MUK1 530 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 BCRP11274 1271 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 USP5P45974 858 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 PRMT2P55345 433 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 TREML2Q5T2D2 321 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 DNAJC2Q99543 621 aaKnown RBP23.75■■□□□ 1.39
LIME1-201ENST00000309546 TMEM106CQ9BVX2 250 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 DNAJC18Q9H819 358 aa23.75■■□□□ 1.39
LIME1-201ENST00000309546 KIAA0100Q14667 2235 aaKnown RBP23.75■■□□□ 1.39
LIME1-201ENST00000309546 RAB11FIP3O75154 756 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 OSBPP22059 807 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 HOXD10P28358 340 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 CERS3Q8IU89 383 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 TBC1D2Q9BYX2 928 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 AS3MTQ9HBK9 375 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 SRRDQ9UH36 339 aa23.74■■□□□ 1.39
LIME1-201ENST00000309546 NAV1Q8NEY1 1877 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 GDF11O95390 407 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 HMGCS2P54868 508 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 FCGRTP55899 365 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 PDE3AQ14432 1141 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 TTF1Q15361 905 aaPredicted RBP23.73■■□□□ 1.39
LIME1-201ENST00000309546 FOXP4Q8IVH2 680 aaPredicted RBP23.73■■□□□ 1.39
LIME1-201ENST00000309546 RAET1EQ8TD07 263 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 PNMA3Q9UL41 463 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 MYPNQ86TC9 1320 aa23.73■■□□□ 1.39
LIME1-201ENST00000309546 GOLIM4O00461 696 aa23.72■■□□□ 1.39
LIME1-201ENST00000309546 PROCA1Q8NCQ7 364 aaPredicted RBP23.72■■□□□ 1.39
LIME1-201ENST00000309546 ASNSP08243 561 aa23.71■■□□□ 1.39
LIME1-201ENST00000309546 EN2P19622 333 aaPredicted RBP23.71■■□□□ 1.39
LIME1-201ENST00000309546 SHROOM1Q2M3G4 852 aaPredicted RBP23.71■■□□□ 1.39
LIME1-201ENST00000309546 JAG1P78504 1218 aa23.7■■□□□ 1.38
LIME1-201ENST00000309546 MTMR2Q13614 643 aa23.7■■□□□ 1.38
LIME1-201ENST00000309546 TMED8Q6PL24 325 aaPredicted RBP23.7■■□□□ 1.38
LIME1-201ENST00000309546 ANKRD13CQ8N6S4 541 aa23.7■■□□□ 1.38
LIME1-201ENST00000309546 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.7■■□□□ 1.38
LIME1-201ENST00000309546 MAGEB6P1A0A0J9YX57 407 aa23.69■■□□□ 1.38
LIME1-201ENST00000309546 PDE6AP16499 860 aa23.69■■□□□ 1.38
LIME1-201ENST00000309546 PRKCZQ05513 592 aa23.69■■□□□ 1.38
LIME1-201ENST00000309546 SLC9C2Q5TAH2 1124 aa23.69■■□□□ 1.38
LIME1-201ENST00000309546 METTL16Q86W50 562 aaKnown RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms