RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZDHHC9Q9Y397 364 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 KIF5AQ12840 1032 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 SLC4A8Q2Y0W8 1093 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 ANO1Q5XXA6 986 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 GBP6Q6ZN66 633 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 IQCA1Q86XH1 822 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 DESI2Q9BSY9 194 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 CCDC194A0A1B0GVG4 234 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 HMGB2P26583 209 aaKnown RBP17.37■□□□□ 0.37
SHH-201ENST00000297261 FBXO38Q6PIJ6 1188 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 ELP1O95163 1332 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 ADKP55263 362 aaKnown RBP17.36■□□□□ 0.37
SHH-201ENST00000297261 TUBB4BP68371 445 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 TERF2Q15554 542 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 LONRF3Q496Y0 759 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 JAG2Q9Y219 1238 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 PIK3C2AO00443 1686 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 NDUFAB1O14561 156 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 GPAA1O43292 621 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 CCDC91Q7Z6B0 441 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 SYNE4Q8N205 404 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 PPM1EQ8WY54 764 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 KIF2CQ99661 725 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 PXDNLA1KZ92 1463 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 PRPF4BQ13523 1007 aaKnown RBP17.36■□□□□ 0.37
SHH-201ENST00000297261 CCDC122Q5T0U0 273 aa17.36■□□□□ 0.37
SHH-201ENST00000297261 NAA16Q6N069 864 aaPredicted RBP17.36■□□□□ 0.37
SHH-201ENST00000297261 MROH5Q6ZUA9 1318 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 GPR161Q8N6U8 529 aaKnown RBP17.35■□□□□ 0.37
SHH-201ENST00000297261 TDRD7Q8NHU6 1098 aaKnown RBP17.35■□□□□ 0.37
SHH-201ENST00000297261 KIAA1468Q9P260 1216 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 ANKRD62A6NC57 917 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 CIAO1O76071 339 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 MBD4O95243 580 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 ARID5BQ14865 1188 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 IFT81Q8WYA0 676 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 CCDC114Q96M63 670 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 ZNF219Q9P2Y4 722 aaPredicted RBP17.35■□□□□ 0.37
SHH-201ENST00000297261 TACC1O75410 805 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 NLRP12P59046 1061 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 UBXN1Q04323 297 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 CNGA4Q8IV77 575 aa17.35■□□□□ 0.37
SHH-201ENST00000297261 NAPGQ99747 312 aaPredicted RBP17.35■□□□□ 0.37
SHH-201ENST00000297261 KDM6AO15550 1401 aaPredicted RBP17.35■□□□□ 0.37
SHH-201ENST00000297261 TRMT44Q8IYL2 757 aaKnown RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 SCLT1Q96NL6 688 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 VPS16Q9H269 839 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 KCNH3Q9ULD8 1083 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 LUC7L2Q9Y383 392 aaKnown RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 RGPD8O14715 1765 aaPredicted RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 CYP19A1P11511 503 aaPredicted RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 RBM5P52756 815 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHH-201ENST00000297261 ZNF589Q86UQ0 364 aaPredicted RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 CCDC42Q96M95 316 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 PALLDQ8WX93 1383 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 HNRNPH2P55795 449 aaKnown RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 KRI1Q8N9T8 703 aaKnown RBP17.34■□□□□ 0.37
SHH-201ENST00000297261 CNBD1Q8NA66 436 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 MKNK2Q9HBH9 465 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 GPR108Q9NPR9 543 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 TFCP2L1Q9NZI6 479 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 FBXO3Q9UK99 471 aa17.34■□□□□ 0.37
SHH-201ENST00000297261 TRIM75PA6NK02 468 aa17.33■□□□□ 0.37
SHH-201ENST00000297261 CATIPQ7Z7H3 387 aa17.33■□□□□ 0.37
SHH-201ENST00000297261 EZRP15311 586 aaKnown RBP17.33■□□□□ 0.37
SHH-201ENST00000297261 INPP5BP32019 993 aa17.33■□□□□ 0.37
SHH-201ENST00000297261 ZSWIM6Q9HCJ5 1215 aa17.33■□□□□ 0.37
SHH-201ENST00000297261 OVOS2A0A0G2JMS6 1433 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 MACROD2A1Z1Q3 448 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 ERVV-1B6SEH8 477 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 KRT83P78385 493 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 WTAPQ15007 396 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 RTN1Q16799 776 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 CCDC121Q6ZUS5 278 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 INCENPQ9NQS7 918 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 USPL1Q5W0Q7 1092 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 MAP4K1Q92918 833 aa17.33■□□□□ 0.36
SHH-201ENST00000297261 PPP1R1BQ9UD71 204 aaPredicted RBP17.33■□□□□ 0.36
SHH-201ENST00000297261 DDX41Q9UJV9 622 aaKnown RBP17.33■□□□□ 0.36
SHH-201ENST00000297261 XRN1Q8IZH2 1706 aaKnown RBP17.33■□□□□ 0.36
SHH-201ENST00000297261 EFCAB8A8MWE9 144 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 PDE8BO95263 885 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 PTPN21Q16825 1174 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 C11orf57Q6ZUT1 292 aaPredicted RBP17.32■□□□□ 0.36
SHH-201ENST00000297261 LLPHQ9BRT6 129 aaKnown RBP17.32■□□□□ 0.36
SHH-201ENST00000297261 GOLGA6CA6NDK9 693 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 GOLGA6DP0CG33 693 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 VAV2P52735 878 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 SPATA5Q8NB90 893 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 SEC31BQ9NQW1 1179 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 SPTLC3Q9NUV7 552 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 GOLGA6AQ9NYA3 693 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 MAGEB6P1A0A0J9YX57 407 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 ZBTB22O15209 634 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 MMRN2Q9H8L6 949 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 PEAK1Q9H792 1746 aa17.32■□□□□ 0.36
SHH-201ENST00000297261 POLR2DO15514 142 aaKnown RBP17.31■□□□□ 0.36
SHH-201ENST00000297261 LARGE1O95461 756 aa17.31■□□□□ 0.36
SHH-201ENST00000297261 CCDC40Q4G0X9 1142 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms