RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CABP1Q9NZU7 370 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 IFNKQ9P0W0 207 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 TRIM42Q8IWZ5 723 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 PNMA2Q9UL42 364 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 SPDYE16A6NNV3 312 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 LMNAP02545 664 aaKnown RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 SPDYE2Q495Y8 402 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 CTAGE3PQ8IX95 158 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 EEF1DP29692 281 aaKnown RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 RPAINQ86UA6 219 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 KIFC3Q9BVG8 833 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 GPHNQ9NQX3 736 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 KCNG1Q9UIX4 513 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 TRAF5O00463 557 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 GARSP41250 739 aaKnown RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 SND1Q7KZF4 910 aaKnown RBP eCLIP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 USP48Q86UV5 1035 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 ZNF449Q6P9G9 518 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 TPCN1Q9ULQ1 816 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 PDZD4Q76G19 769 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 CNPY2Q9Y2B0 182 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 RFC4P35249 363 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 TBC1D9Q6ZT07 1266 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 TMCO5AQ8N6Q1 288 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 RIPOR2Q9Y4F9 1068 aa15.41■□□□□ 0.06
CCDC88A-201ENST00000263630 SLC4A4Q9Y6R1 1079 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 CSRNP1Q96S65 589 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 DACT1Q9NYF0 836 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 EIF3DO15371 548 aaKnown RBP eCLIP15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 RIC8AQ9NPQ8 531 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 SECISBP2LQ93073 1101 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 ZBTB21Q9ULJ3 1066 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 HGSO14964 777 aaPredicted RBP15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 SCYL1Q96KG9 808 aa15.4■□□□□ 0.06
CCDC88A-201ENST00000263630 ARHGAP6O43182 974 aa15.39■□□□□ 0.06
CCDC88A-201ENST00000263630 LONP1P36776 959 aaKnown RBP15.39■□□□□ 0.06
CCDC88A-201ENST00000263630 MCMDC2Q4G0Z9 681 aa15.39■□□□□ 0.06
CCDC88A-201ENST00000263630 MAD1L1Q9Y6D9 718 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 RAB44Q7Z6P3 723 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 ZNF622Q969S3 477 aaKnown RBP eCLIP15.39■□□□□ 0.058e-7■■□□□ 13.1
CCDC88A-201ENST00000263630 SATB2Q9UPW6 733 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 M0QZ92 97 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 ANAPC5Q9UJX4 755 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 TEX12Q9BXU0 123 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 IMPACTQ9P2X3 320 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 SUFUQ9UMX1 484 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 CHMP6Q96FZ7 201 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 RTEL1Q9NZ71 1219 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 CCDC13Q8IYE1 715 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 POMGNT1Q8WZA1 660 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 MPRIPQ6WCQ1 1025 aa15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 PPWD1Q96BP3 646 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 TACO1Q9BSH4 297 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-201ENST00000263630 MYL5Q02045 173 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 RNASELQ05823 741 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 SNCBQ16143 134 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 FAM186BQ8IYM0 893 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 KCNA4P22459 653 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 NUCB1Q02818 461 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 CFAP61Q8NHU2 1237 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 TXLNGQ9NUQ3 528 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 SCOCQ9UIL1 159 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 CYP7A1P22680 504 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 NOP14P78316 857 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 TBC1D8BQ0IIM8 1120 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 FAM69CQ0P6D2 419 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 HDAC11Q96DB2 347 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 VPS37BQ9H9H4 285 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 ZRANB1Q9UGI0 708 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 CCPG1Q9ULG6 757 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 CTNND2Q9UQB3 1225 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 PIK3R4Q99570 1358 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 SART1O43290 800 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 TNNI2P48788 182 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 IL1RL1Q01638 556 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 KRT81Q14533 505 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 LRRC23Q53EV4 343 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 FCHSD1Q86WN1 690 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 RRS1Q15050 365 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 KRT71Q3SY84 523 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 IGSF22Q8N9C0 903 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 MIS12Q9H081 205 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 CCDC141Q6ZP82 1450 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 BIN2Q9UBW5 565 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 A0A1B0GW55 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L2P0CJ85 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L3P0CJ86 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L4P0CJ87 422 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L5P0CJ88 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L6P0CJ89 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4L7P0CJ90 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 DUX4Q9UBX2 424 aa15.38■□□□□ 0.05
CCDC88A-201ENST00000263630 ANKRD35Q8N283 1001 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 IWS1Q96ST2 819 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 SLC13A4Q9UKG4 626 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 SESN3P58005 492 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 RAD51AP2Q09MP3 1159 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 Q6ZUG5 572 aa15.37■□□□□ 0.05
CCDC88A-201ENST00000263630 SKA2Q8WVK7 121 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms