RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 CFAP100Q494V2 611 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 SPECC1Q5M775 1068 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 L2HGDHQ9H9P8 463 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 FANCLQ9NW38 375 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.52■□□□□ 0.4
DDX56-201ENST00000258772 KCNJ14Q9UNX9 436 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 SLC4A4Q9Y6R1 1079 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 V9GYY5 206 aaPredicted RBP17.52■□□□□ 0.4
DDX56-201ENST00000258772 PNPLA7Q6ZV29 1317 aa17.52■□□□□ 0.4
DDX56-201ENST00000258772 DISP2A7MBM2 1401 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 FOXN1O15353 648 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 BMP6P22004 513 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 BCAMP50895 628 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 SYT10Q6XYQ8 523 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 FOXP1Q9H334 677 aaPredicted RBP17.52■□□□□ 0.39
DDX56-201ENST00000258772 TOMM22Q9NS69 142 aa17.52■□□□□ 0.39
DDX56-201ENST00000258772 DDX41Q9UJV9 622 aaKnown RBP17.52■□□□□ 0.39
DDX56-201ENST00000258772 PTPREP23469 700 aa17.51■□□□□ 0.39
DDX56-201ENST00000258772 VSTM4Q8IW00 320 aa17.51■□□□□ 0.39
DDX56-201ENST00000258772 CRACR2BQ8N4Y2 399 aaPredicted RBP17.51■□□□□ 0.39
DDX56-201ENST00000258772 ZNF397Q8NF99 534 aaPredicted RBP17.51■□□□□ 0.39
DDX56-201ENST00000258772 MTA3Q9BTC8 594 aa17.51■□□□□ 0.39
DDX56-201ENST00000258772 TMX1Q9H3N1 280 aa17.51■□□□□ 0.39
DDX56-201ENST00000258772 GRIN1Q05586 938 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 PDE4BQ07343 736 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 RILPL1Q5EBL4 403 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 TMTC2Q8N394 836 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 CCDC82Q8N4S0 544 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 HOOK1Q9UJC3 728 aaKnown RBP17.5■□□□□ 0.39
DDX56-201ENST00000258772 FBXO2Q9UK22 296 aaPredicted RBP17.5■□□□□ 0.39
DDX56-201ENST00000258772 ERICH2A1L162 156 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 EXOC5O00471 708 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 DEXIO95424 95 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 EIF5P55010 431 aaKnown RBP17.5■□□□□ 0.39
DDX56-201ENST00000258772 KMT5BQ4FZB7 885 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 CCDC93Q567U6 631 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 GTPBP4Q9BZE4 634 aaKnown RBP17.5■□□□□ 0.39
DDX56-201ENST00000258772 BCORQ6W2J9 1755 aa17.5■□□□□ 0.39
DDX56-201ENST00000258772 CCDC196A0A1B0GTZ2 297 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 CCP110O43303 1012 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 ELF2Q15723 593 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 CMTR1Q8N1G2 835 aaKnown RBP17.49■□□□□ 0.39
DDX56-201ENST00000258772 UTP14AQ9BVJ6 771 aaKnown RBP17.49■□□□□ 0.39
DDX56-201ENST00000258772 TMEM232C9JQI7 657 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 TOP1P11387 765 aaKnown RBP17.49■□□□□ 0.39
DDX56-201ENST00000258772 FANCBQ8NB91 859 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 MAN1B1Q9UKM7 699 aa17.49■□□□□ 0.39
DDX56-201ENST00000258772 MORC2Q9Y6X9 1032 aaPredicted RBP17.49■□□□□ 0.39
DDX56-201ENST00000258772 ZNF335Q9H4Z2 1342 aaPredicted RBP17.49■□□□□ 0.39
DDX56-201ENST00000258772 POLR2DO15514 142 aaKnown RBP17.48■□□□□ 0.39
DDX56-201ENST00000258772 RCAN1P53805 252 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 ETF1P62495 437 aaKnown RBP17.48■□□□□ 0.39
DDX56-201ENST00000258772 NR5A1Q13285 461 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 POSTNQ15063 836 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 NT5DC1Q5TFE4 455 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 ZNF579Q8NAF0 562 aaKnown RBP17.48■□□□□ 0.39
DDX56-201ENST00000258772 MIGA1Q8NAN2 632 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 RNF41Q9H4P4 317 aaPredicted RBP17.48■□□□□ 0.39
DDX56-201ENST00000258772 LRP2BPQ9P2M1 347 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 PCDHB6Q9Y5E3 794 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 MYH6P13533 1939 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 SARSP49591 514 aaKnown RBP17.48■□□□□ 0.39
DDX56-201ENST00000258772 CCDC152Q4G0S7 254 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 HOMER1Q86YM7 354 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 ZNF654Q8IZM8 581 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 NUP133Q8WUM0 1156 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 INTS13Q9NVM9 706 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 SERTAD1Q9UHV2 236 aa17.48■□□□□ 0.39
DDX56-201ENST00000258772 IGHMBP2P38935 993 aaKnown RBP17.47■□□□□ 0.39
DDX56-201ENST00000258772 FBXO38Q6PIJ6 1188 aa17.47■□□□□ 0.39
DDX56-201ENST00000258772 SRPRBQ9Y5M8 271 aaKnown RBP17.47■□□□□ 0.39
DDX56-201ENST00000258772 NHSL1Q5SYE7 1610 aa17.47■□□□□ 0.39
DDX56-201ENST00000258772 PRR29P0C7W0 189 aa17.47■□□□□ 0.39
DDX56-201ENST00000258772 PPARAQ07869 468 aa17.47■□□□□ 0.39
DDX56-201ENST00000258772 PTPN21Q16825 1174 aa17.47■□□□□ 0.39
DDX56-201ENST00000258772 INTS5Q6P9B9 1019 aaKnown RBP17.47■□□□□ 0.39
DDX56-201ENST00000258772 GOLGA8FQ08AF8 430 aa17.46■□□□□ 0.39
DDX56-201ENST00000258772 GOLGA8DPQ0D2H9 430 aa17.46■□□□□ 0.39
DDX56-201ENST00000258772 TRIM65Q6PJ69 517 aa17.46■□□□□ 0.39
DDX56-201ENST00000258772 MLKLQ8NB16 471 aa17.46■□□□□ 0.39
DDX56-201ENST00000258772 OXER1Q8TDS5 423 aa17.46■□□□□ 0.39
DDX56-201ENST00000258772 MORC3Q14149 939 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 TMEM139Q8IV31 216 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 REXO1L1PQ8IX06 675 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 ENOX1Q8TC92 643 aaKnown RBP17.46■□□□□ 0.38
DDX56-201ENST00000258772 SMARCE1Q969G3 411 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 UBAC1Q9BSL1 405 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 CEP131Q9UPN4 1083 aa17.46■□□□□ 0.38
DDX56-201ENST00000258772 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.46■□□□□ 0.38
DDX56-201ENST00000258772 PHLPP2Q6ZVD8 1323 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 ZNF18P17022 549 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 ATP2B1P20020 1258 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 KCNA4P22459 653 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 CYP7A1P22680 504 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 FMR1Q06787 632 aaKnown RBP eCLIP17.45■□□□□ 0.38
DDX56-201ENST00000258772 CHRNDQ07001 517 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 TBX2Q13207 712 aaPredicted RBP17.45■□□□□ 0.38
DDX56-201ENST00000258772 ERCC6LQ2NKX8 1250 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 PARP10Q53GL7 1025 aa17.45■□□□□ 0.38
DDX56-201ENST00000258772 HSP90AA4PQ58FG1 418 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms