RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 DDX41Q9UJV9 622 aaKnown RBP12.35□□□□□ -0.43
MSH6-201ENST00000234420 KSR1Q8IVT5 923 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 A6NNZ2 444 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 TUBB8Q3ZCM7 444 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 CASC4Q6P4E1 433 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 DCLK2Q8N568 766 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 RILPQ96NA2 401 aa12.35□□□□□ -0.43
MSH6-201ENST00000234420 DNAJC8O75937 253 aaPredicted RBP12.34□□□□□ -0.43
MSH6-201ENST00000234420 RANBP1P43487 201 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 INF2Q27J81 1249 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 PDZD8Q8NEN9 1154 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 HVCN1Q96D96 273 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 UBXN1Q04323 297 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 WTAPQ15007 396 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 CCDC26Q8TAB7 109 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 TRIM31Q9BZY9 425 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 METTL14Q9HCE5 456 aaKnown RBP12.34□□□□□ -0.43
MSH6-201ENST00000234420 WDR7Q9Y4E6 1490 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 ZRANB2O95218 330 aaKnown RBP eCLIP12.34□□□□□ -0.43
MSH6-201ENST00000234420 C8orf74Q6P047 294 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 GDAP1L1Q96MZ0 367 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 JPH2Q9BR39 696 aaPredicted RBP12.34□□□□□ -0.43
MSH6-201ENST00000234420 ESYT2A0FGR8 921 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 FTOQ9C0B1 505 aaKnown RBP eCLIP12.34□□□□□ -0.43
MSH6-201ENST00000234420 LRFN2Q9ULH4 789 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 CD2APQ9Y5K6 639 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 KIF21BO75037 1637 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 ZSCAN22P10073 491 aaPredicted RBP12.34□□□□□ -0.43
MSH6-201ENST00000234420 BAG6P46379 1132 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 RASSF2P50749 326 aa12.34□□□□□ -0.43
MSH6-201ENST00000234420 CCDC92Q53HC0 331 aaPredicted RBP12.34□□□□□ -0.43
MSH6-201ENST00000234420 GAPVD1Q14C86 1478 aa12.33□□□□□ -0.43
MSH6-201ENST00000234420 SYNDIG1LA6NDD5 238 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 TCP10L2B9ZVM9 353 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 HHATQ5VTY9 493 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 ABI1Q8IZP0 508 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 LDHBP07195 334 aaKnown RBP12.33□□□□□ -0.44
MSH6-201ENST00000234420 PSMD2Q13200 908 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 SPDL1Q96EA4 605 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 USP16Q9Y5T5 823 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 PPIP5K2O43314 1243 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 ANKRD20A3Q5VUR7 823 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 ZGPATQ8N5A5 531 aaKnown RBP12.33□□□□□ -0.44
MSH6-201ENST00000234420 RRP36Q96EU6 259 aaKnown RBP12.33□□□□□ -0.44
MSH6-201ENST00000234420 ZRANB1Q9UGI0 708 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 NUB1Q9Y5A7 615 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 PLCB4Q15147 1175 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 TAOK1Q7L7X3 1001 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 NR1I2O75469 434 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 RAD51AP2Q09MP3 1159 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 PLEKHG3A1L390 1219 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 CEP104O60308 925 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 STX17P56962 302 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 SLITRK6Q9H5Y7 841 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 RMND1Q9NWS8 449 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 FAN1Q9Y2M0 1017 aa12.33□□□□□ -0.44
MSH6-201ENST00000234420 MAN1A1P33908 653 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 GNGT1P63211 74 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 RNASELQ05823 741 aaKnown RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 RAPGEF1Q13905 1077 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 SLMAPQ14BN4 828 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 CCDC14Q49A88 953 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 GPR161Q8N6U8 529 aaKnown RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 PRG4Q92954 1404 aaPredicted RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 LMCD1Q9NZU5 365 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 LARSQ9P2J5 1176 aaKnown RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 TRPC6Q9Y210 931 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 UTP11Q9Y3A2 253 aaKnown RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 STRN3Q13033 797 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 PDCD2Q16342 344 aaPredicted RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 TPTE2Q6XPS3 522 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 IWS1Q96ST2 819 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 UBN2Q6ZU65 1347 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 PPP2R1AP30153 589 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 SLC9A5Q14940 896 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 USTQ9Y2C2 406 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.32□□□□□ -0.44
MSH6-201ENST00000234420 CNBD1Q8NA66 436 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 NSMCE1Q8WV22 266 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 Q9H521 79 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 MKL2Q9ULH7 1088 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 SCINQ9Y6U3 715 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 PRPF6O94906 941 aaKnown RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 IRX4P78413 519 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 C1orf228Q6PIY5 440 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 NECAB1Q8N987 351 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 KIF1BPQ96EK5 621 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 TSGA10Q9BZW7 698 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 MARCKSP29966 332 aaPredicted RBP12.32□□□□□ -0.44
MSH6-201ENST00000234420 DMTNQ08495 405 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 HSP90AA5PQ58FG0 334 aa12.32□□□□□ -0.44
MSH6-201ENST00000234420 DPP8Q6V1X1 898 aaPredicted RBP12.31□□□□□ -0.44
MSH6-201ENST00000234420 RMDN2Q96LZ7 410 aa12.31□□□□□ -0.44
MSH6-201ENST00000234420 NAPGQ99747 312 aaPredicted RBP12.31□□□□□ -0.44
MSH6-201ENST00000234420 YY1AP1Q9H869 796 aa12.31□□□□□ -0.44
MSH6-201ENST00000234420 TBC1D7Q9P0N9 293 aa12.31□□□□□ -0.44
MSH6-201ENST00000234420 RUFY4Q6ZNE9 571 aa12.31□□□□□ -0.44
MSH6-201ENST00000234420 HAUS1Q96CS2 278 aa12.31□□□□□ -0.44
MSH6-201ENST00000234420 ORC3Q9UBD5 711 aaPredicted RBP12.31□□□□□ -0.44
MSH6-201ENST00000234420 PALM3A6NDB9 673 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms