RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SLC12A7Q9Y666 1083 aa21.26■□□□□ 0.99
VIM-201ENST00000224237 FOCADQ5VW36 1801 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 CPLX1O14810 134 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 ZBTB43O43298 467 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 TRAK2O60296 914 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 CYP2D6P10635 497 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 SLC4A8Q2Y0W8 1093 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 SOGA3Q5TF21 947 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 IQCA1Q86XH1 822 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 ZNF277Q9NRM2 450 aaPredicted RBP21.25■□□□□ 0.99
VIM-201ENST00000224237 COL4A5P29400 1685 aa21.25■□□□□ 0.99
VIM-201ENST00000224237 USP17L3A6NCW0 530 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 USP17L4A6NCW7 530 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 RANBP6O60518 1105 aaKnown RBP21.24■□□□□ 0.99
VIM-201ENST00000224237 SCNN1DP51172 638 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 HHIPL2Q6UWX4 724 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 SYNE3Q6ZMZ3 975 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 USP17L1Q7RTZ2 530 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 MAPKAPK5Q8IW41 473 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 ZKSCAN3Q9BRR0 538 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 SENP2Q9HC62 589 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 FLT1P17948 1338 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 NID2Q14112 1375 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 YDJCA8MPS7 323 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 PRDM1O75626 825 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 SKOR2Q2VWA4 1001 aaPredicted RBP21.24■□□□□ 0.99
VIM-201ENST00000224237 DACT2Q5SW24 774 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 MICU3Q86XE3 530 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 TEKT1Q969V4 418 aa21.24■□□□□ 0.99
VIM-201ENST00000224237 TNKSO95271 1327 aa21.23■□□□□ 0.99
VIM-201ENST00000224237 RCAN1P53805 252 aa21.23■□□□□ 0.99
VIM-201ENST00000224237 CDC37L1Q7L3B6 337 aa21.23■□□□□ 0.99
VIM-201ENST00000224237 ZSCAN10Q96SZ4 725 aaPredicted RBP21.23■□□□□ 0.99
VIM-201ENST00000224237 CDKL5O76039 1030 aa21.22■□□□□ 0.99
VIM-201ENST00000224237 POLR3DP05423 398 aaPredicted RBP21.22■□□□□ 0.99
VIM-201ENST00000224237 SEC23AQ15436 765 aa21.22■□□□□ 0.99
VIM-201ENST00000224237 DALRD3Q5D0E6 543 aaKnown RBP21.22■□□□□ 0.99
VIM-201ENST00000224237 CPLX2Q6PUV4 134 aaKnown RBP21.22■□□□□ 0.99
VIM-201ENST00000224237 RAB11FIP4Q86YS3 637 aa21.22■□□□□ 0.99
VIM-201ENST00000224237 MRIQ9BWK5 157 aa21.22■□□□□ 0.99
VIM-201ENST00000224237 VPS33BQ9H267 617 aa21.22■□□□□ 0.99
VIM-201ENST00000224237 GOLGA8AA7E2F4 631 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 H3BQV1 296 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 HDLBPQ00341 1268 aaKnown RBP21.21■□□□□ 0.99
VIM-201ENST00000224237 GSE1Q14687 1217 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 IFFO2Q5TF58 517 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 KIAA0825Q8IV33 1275 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 LMBRD1Q9NUN5 540 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 CD2APQ9Y5K6 639 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 PSME4Q14997 1843 aa21.21■□□□□ 0.99
VIM-201ENST00000224237 MYH1P12882 1939 aa21.2■□□□□ 0.99
VIM-201ENST00000224237 LARGE2Q8N3Y3 721 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 ENAHQ8N8S7 591 aaPredicted RBP21.2■□□□□ 0.98
VIM-201ENST00000224237 CHAMP1Q96JM3 812 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 ZNF287Q9HBT7 754 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 RXRAP19793 462 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 CRKP46108 304 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 NLGN2Q8NFZ4 835 aa21.2■□□□□ 0.98
VIM-201ENST00000224237 SAP30BPQ9UHR5 308 aaKnown RBP21.2■□□□□ 0.98
VIM-201ENST00000224237 TSPY2A6NKD2 308 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 FDPSP14324 419 aaKnown RBP21.19■□□□□ 0.98
VIM-201ENST00000224237 CDC27P30260 824 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 ADD1P35611 737 aaKnown RBP21.19■□□□□ 0.98
VIM-201ENST00000224237 FOXD4L6Q3SYB3 417 aaPredicted RBP21.19■□□□□ 0.98
VIM-201ENST00000224237 IFIT1BQ5T764 474 aaKnown RBP21.19■□□□□ 0.98
VIM-201ENST00000224237 FOXD4L3Q6VB84 417 aaPredicted RBP21.19■□□□□ 0.98
VIM-201ENST00000224237 ZNF654Q8IZM8 581 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 ZDHHC15Q96MV8 337 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 MYL10Q9BUA6 226 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 PCDHAC2Q9Y5I4 1007 aa21.19■□□□□ 0.98
VIM-201ENST00000224237 PRPF40AO75400 957 aaKnown RBP21.18■□□□□ 0.98
VIM-201ENST00000224237 PLCD1P51178 756 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 APOBEC3HQ6NTF7 200 aaKnown RBP21.18■□□□□ 0.98
VIM-201ENST00000224237 MKNK2Q9HBH9 465 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 ORC3Q9UBD5 711 aaPredicted RBP21.18■□□□□ 0.98
VIM-201ENST00000224237 BCS1LQ9Y276 419 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 CCDC196A0A1B0GTZ2 297 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 PPP2R5BQ15173 497 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 CCDC144CPQ8IYA2 1237 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 DYNLL2Q96FJ2 89 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 USP40Q9NVE5 1235 aa21.18■□□□□ 0.98
VIM-201ENST00000224237 ECM29Q5VYK3 1845 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 FER1L6Q2WGJ9 1857 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 WDHD1O75717 1129 aaPredicted RBP21.17■□□□□ 0.98
VIM-201ENST00000224237 RTN1Q16799 776 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 FAM47AQ5JRC9 791 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 C16orf86Q6ZW13 317 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 ZSCAN16Q9H4T2 348 aaPredicted RBP21.17■□□□□ 0.98
VIM-201ENST00000224237 FAM217BQ9NTX9 383 aaPredicted RBP21.17■□□□□ 0.98
VIM-201ENST00000224237 SERPINA10Q9UK55 444 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 TCHHQ07283 1943 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 MYO3BQ8WXR4 1341 aa21.17■□□□□ 0.98
VIM-201ENST00000224237 PPFIA3O75145 1194 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 RAD17O75943 681 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 NTRK3Q16288 839 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 KLHL40Q2TBA0 621 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 FERMT3Q86UX7 667 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 TMEM87AQ8NBN3 555 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 RGS22Q8NE09 1264 aa21.16■□□□□ 0.98
VIM-201ENST00000224237 DDX49Q9Y6V7 483 aaKnown RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms